Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901)

Taxonomy: cellular organisms; Bacteria; Fusobacteria; Fusobacteriia; Fusobacteriales; Leptotrichiaceae; Streptobacillus; Streptobacillus moniliformis

Average proteome isoelectric point is 6.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1431 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D1AWA7|D1AWA7_STRM9 Uncharacterized protein OS=Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) OX=519441 GN=Smon_0086 PE=4 SV=1
MM1 pKa = 7.09KK2 pKa = 9.86TGIYY6 pKa = 10.25FGTTTGTTEE15 pKa = 5.16DD16 pKa = 3.09IANRR20 pKa = 11.84ISNHH24 pKa = 5.9FDD26 pKa = 3.15DD27 pKa = 4.3VDD29 pKa = 4.11VIEE32 pKa = 4.26VSEE35 pKa = 5.14GIDD38 pKa = 3.18TFSNYY43 pKa = 10.64DD44 pKa = 3.87LLILGSPTWGLGDD57 pKa = 5.18LQDD60 pKa = 4.57DD61 pKa = 3.94WMACVDD67 pKa = 5.03EE68 pKa = 6.12IDD70 pKa = 6.17DD71 pKa = 4.16MDD73 pKa = 5.88LSDD76 pKa = 5.19KK77 pKa = 10.85YY78 pKa = 11.23VALFGTGDD86 pKa = 3.32QASFADD92 pKa = 3.83SFIDD96 pKa = 5.22AIEE99 pKa = 3.97ILYY102 pKa = 10.54KK103 pKa = 10.51KK104 pKa = 10.18ALKK107 pKa = 10.62ANAKK111 pKa = 10.09IIGFTDD117 pKa = 2.81IDD119 pKa = 4.44GYY121 pKa = 11.62DD122 pKa = 3.62FTDD125 pKa = 3.37SLAVKK130 pKa = 10.07NGRR133 pKa = 11.84FICLAIDD140 pKa = 3.96EE141 pKa = 4.99LNQPEE146 pKa = 4.5LSDD149 pKa = 3.49EE150 pKa = 5.43RR151 pKa = 11.84IEE153 pKa = 4.1NWCNQLKK160 pKa = 10.66EE161 pKa = 4.48EE162 pKa = 4.35IEE164 pKa = 4.24KK165 pKa = 10.99

Molecular weight: 18.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D1AWC1|D1AWC1_STRM9 Type II site-specific deoxyribonuclease OS=Streptobacillus moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651 / 9901) OX=519441 GN=Smon_0101 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.34QPNKK9 pKa = 9.21RR10 pKa = 11.84KK11 pKa = 10.24RR12 pKa = 11.84KK13 pKa = 7.34MDD15 pKa = 3.12HH16 pKa = 6.11GFRR19 pKa = 11.84LRR21 pKa = 11.84MKK23 pKa = 9.07TKK25 pKa = 10.2SGRR28 pKa = 11.84NVLKK32 pKa = 10.45RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.53GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1431

0

1431

484340

33

2192

338.5

38.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.734 ± 0.075

0.533 ± 0.019

5.609 ± 0.057

7.817 ± 0.076

4.72 ± 0.064

6.15 ± 0.082

1.276 ± 0.021

10.404 ± 0.088

10.365 ± 0.081

9.475 ± 0.074

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.259 ± 0.03

7.301 ± 0.081

2.23 ± 0.035

1.879 ± 0.027

3.237 ± 0.039

6.437 ± 0.058

4.711 ± 0.056

5.794 ± 0.052

0.57 ± 0.019

4.501 ± 0.051
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski