Gordonia phage Gaea

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vividuovirus; unclassified Vividuovirus

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 86 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G3M8W0|A0A3G3M8W0_9CAUD Uncharacterized protein OS=Gordonia phage Gaea OX=2483669 GN=63 PE=4 SV=1
MM1 pKa = 7.64SDD3 pKa = 3.12AAGPRR8 pKa = 11.84ADD10 pKa = 3.83EE11 pKa = 4.85CSCPMTDD18 pKa = 3.61PGVPGIRR25 pKa = 11.84PAEE28 pKa = 4.04FEE30 pKa = 3.87QDD32 pKa = 3.63PLCWHH37 pKa = 6.95HH38 pKa = 7.02PMDD41 pKa = 4.88GGTFLDD47 pKa = 4.63PVQSAPIGWIQPRR60 pKa = 11.84YY61 pKa = 9.02YY62 pKa = 11.04VEE64 pKa = 4.28TFDD67 pKa = 5.44AAPSSAWLPVADD79 pKa = 5.72LPDD82 pKa = 4.04LHH84 pKa = 7.11PSDD87 pKa = 5.37DD88 pKa = 3.85PVIVGGDD95 pKa = 3.48GRR97 pKa = 11.84PWHH100 pKa = 6.69PLPDD104 pKa = 4.1GTWAPIEE111 pKa = 4.07PTT113 pKa = 3.41

Molecular weight: 12.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G3M9X6|A0A3G3M9X6_9CAUD Uncharacterized protein OS=Gordonia phage Gaea OX=2483669 GN=46 PE=4 SV=1
MM1 pKa = 7.37IPGVRR6 pKa = 11.84FRR8 pKa = 11.84ATRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84PSGLITFDD21 pKa = 3.18NSTVLDD27 pKa = 4.74GSATTSFGLTVGGSNATIIVFAAGNLTNAATVDD60 pKa = 4.05GVAMTLIGKK69 pKa = 9.42SSNAAMWAITGLAAGARR86 pKa = 11.84NVVVTRR92 pKa = 11.84AAATSYY98 pKa = 10.2IVSAMSYY105 pKa = 10.42LGAASFAGGVVNSGTGTAMSSAPTGGQLKK134 pKa = 10.21VAGFDD139 pKa = 3.99FSSSSADD146 pKa = 3.33FAGITTDD153 pKa = 2.73GTQRR157 pKa = 11.84VKK159 pKa = 10.78YY160 pKa = 10.35RR161 pKa = 11.84RR162 pKa = 11.84VNGNNVLVADD172 pKa = 4.81KK173 pKa = 8.75PTGPIGATLVGSSSWTSIGVSLAAA197 pKa = 4.98

Molecular weight: 19.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

86

0

86

18398

27

1670

213.9

23.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.431 ± 0.391

0.772 ± 0.116

7.669 ± 0.554

5.414 ± 0.416

2.397 ± 0.171

8.778 ± 0.498

2.06 ± 0.183

4.441 ± 0.257

2.44 ± 0.175

7.68 ± 0.26

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.147 ± 0.104

2.707 ± 0.152

6.18 ± 0.272

3.718 ± 0.174

7.485 ± 0.449

4.984 ± 0.294

6.533 ± 0.298

7.887 ± 0.213

2.109 ± 0.123

2.169 ± 0.157
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski