Fertoebacter nigrum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Fertoeibacter

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3609 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7C9K5S6|A0A7C9K5S6_9RHOB Pseudouridine synthase OS=Fertoebacter nigrum OX=2656921 GN=GEU84_15415 PE=3 SV=1
MM1 pKa = 7.27LVAALMPASMAVAHH15 pKa = 5.78PHH17 pKa = 5.99IFIDD21 pKa = 3.53TGLEE25 pKa = 4.16VIFDD29 pKa = 3.78ATGQATALRR38 pKa = 11.84ITWTYY43 pKa = 11.61DD44 pKa = 2.96DD45 pKa = 5.32FYY47 pKa = 11.36SLLVMEE53 pKa = 5.54DD54 pKa = 3.29RR55 pKa = 11.84GLDD58 pKa = 3.34ADD60 pKa = 3.99FDD62 pKa = 4.5GVLTADD68 pKa = 3.78EE69 pKa = 4.07QAALDD74 pKa = 4.23GFDD77 pKa = 3.84MQWVAGFPGDD87 pKa = 3.47TYY89 pKa = 11.81ALLGTAPLDD98 pKa = 3.87LGPPQEE104 pKa = 4.23WTASYY109 pKa = 11.43ADD111 pKa = 3.62GKK113 pKa = 9.09ITSTHH118 pKa = 5.48LRR120 pKa = 11.84RR121 pKa = 11.84FAAPVAPVADD131 pKa = 3.88PLVVQVYY138 pKa = 10.85DD139 pKa = 3.63PGFYY143 pKa = 9.98SAYY146 pKa = 9.78AIAGTPVLTAAPDD159 pKa = 3.48CSVQVFEE166 pKa = 5.48PDD168 pKa = 3.6RR169 pKa = 11.84EE170 pKa = 4.13AADD173 pKa = 3.98QILQAAIAEE182 pKa = 4.47LAGSVDD188 pKa = 3.31IEE190 pKa = 4.57GDD192 pKa = 3.87FPAVGAAYY200 pKa = 10.3SEE202 pKa = 4.57EE203 pKa = 3.88ARR205 pKa = 11.84ITCSAGSS212 pKa = 3.42

Molecular weight: 22.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7C9GAB9|A0A7C9GAB9_9RHOB Maleylacetoacetate isomerase OS=Fertoebacter nigrum OX=2656921 GN=maiA PE=3 SV=1
MM1 pKa = 7.43AHH3 pKa = 6.95PRR5 pKa = 11.84AQPFPAPGWPRR16 pKa = 11.84PPARR20 pKa = 11.84PVPAARR26 pKa = 11.84PPARR30 pKa = 11.84PQPAPAPPRR39 pKa = 11.84HH40 pKa = 6.51CPRR43 pKa = 11.84PPQPRR48 pKa = 11.84IPGSRR53 pKa = 11.84AFPSSARR60 pKa = 11.84PRR62 pKa = 11.84GASRR66 pKa = 11.84AACPRR71 pKa = 11.84TSGFPLTPPRR81 pKa = 11.84GSAHH85 pKa = 4.57VV86 pKa = 3.4

Molecular weight: 9.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3609

0

3609

1165447

28

2780

322.9

34.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.023 ± 0.071

0.878 ± 0.012

5.798 ± 0.034

5.002 ± 0.031

3.639 ± 0.023

9.176 ± 0.046

2.105 ± 0.022

4.724 ± 0.031

2.479 ± 0.03

10.534 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.724 ± 0.018

2.38 ± 0.022

5.458 ± 0.032

3.164 ± 0.017

6.965 ± 0.04

4.573 ± 0.029

5.433 ± 0.03

7.424 ± 0.032

1.431 ± 0.016

2.09 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski