Levilactobacillus bambusae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Levilactobacillus

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1886 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2V1N1C4|A0A2V1N1C4_9LACO Uncharacterized protein OS=Levilactobacillus bambusae OX=2024736 GN=DCM90_04380 PE=4 SV=1
MM1 pKa = 7.75FDD3 pKa = 3.23NHH5 pKa = 5.87HH6 pKa = 6.64ARR8 pKa = 11.84YY9 pKa = 9.68ASYY12 pKa = 8.47GTVAVLPGEE21 pKa = 4.58MIDD24 pKa = 3.97TVWYY28 pKa = 10.51LIDD31 pKa = 4.09QDD33 pKa = 4.2LQGMFPLEE41 pKa = 4.11NVLTFHH47 pKa = 7.46LEE49 pKa = 3.98AKK51 pKa = 9.69DD52 pKa = 3.46GKK54 pKa = 9.88VAYY57 pKa = 9.99RR58 pKa = 11.84FQPTDD63 pKa = 3.58LDD65 pKa = 4.36DD66 pKa = 5.69GIEE69 pKa = 3.98LSATFDD75 pKa = 3.17TDD77 pKa = 3.91FPYY80 pKa = 10.91SGDD83 pKa = 3.75LPDD86 pKa = 5.24TILAYY91 pKa = 10.38DD92 pKa = 4.45DD93 pKa = 5.05GEE95 pKa = 4.36SQIILLPAEE104 pKa = 4.25ARR106 pKa = 11.84NASFFF111 pKa = 4.09

Molecular weight: 12.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2V1N393|A0A2V1N393_9LACO Uncharacterized protein OS=Levilactobacillus bambusae OX=2024736 GN=DCM90_03970 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.6RR3 pKa = 11.84TFQPKK8 pKa = 8.34KK9 pKa = 7.4RR10 pKa = 11.84HH11 pKa = 5.68RR12 pKa = 11.84SRR14 pKa = 11.84VHH16 pKa = 6.12GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTSNGRR28 pKa = 11.84SVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.05GRR39 pKa = 11.84KK40 pKa = 8.7VLSAA44 pKa = 4.05

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1886

0

1886

563121

20

2101

298.6

33.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.242 ± 0.061

0.416 ± 0.013

6.147 ± 0.071

5.403 ± 0.062

4.041 ± 0.047

6.839 ± 0.051

2.303 ± 0.029

6.474 ± 0.053

5.239 ± 0.058

9.872 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.784 ± 0.027

4.546 ± 0.041

3.84 ± 0.033

4.86 ± 0.058

4.432 ± 0.052

6.037 ± 0.074

6.658 ± 0.05

7.324 ± 0.048

1.134 ± 0.023

3.408 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski