Capybara microvirus Cap1_SP_168

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W821|A0A4P8W821_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_168 OX=2585403 PE=4 SV=1
MM1 pKa = 7.39KK2 pKa = 10.24FSSRR6 pKa = 11.84YY7 pKa = 5.65EE8 pKa = 4.07HH9 pKa = 7.18PVTPITNPGTEE20 pKa = 3.79FRR22 pKa = 11.84NDD24 pKa = 3.28YY25 pKa = 8.8QAHH28 pKa = 5.7YY29 pKa = 10.6DD30 pKa = 3.67EE31 pKa = 6.54DD32 pKa = 4.43GVLVTVKK39 pKa = 10.62VGEE42 pKa = 4.19TNIYY46 pKa = 11.04QMIQSYY52 pKa = 10.87ADD54 pKa = 3.32SVDD57 pKa = 2.93IHH59 pKa = 7.54ILLEE63 pKa = 4.2QFGSGYY69 pKa = 11.14AEE71 pKa = 3.71ALNRR75 pKa = 11.84FEE77 pKa = 5.95GFYY80 pKa = 11.08ADD82 pKa = 4.79ISEE85 pKa = 5.3LPDD88 pKa = 3.46NYY90 pKa = 10.74VGMLNTIEE98 pKa = 4.25TTRR101 pKa = 11.84SYY103 pKa = 11.21FDD105 pKa = 4.57KK106 pKa = 10.94LPADD110 pKa = 3.38IRR112 pKa = 11.84SKK114 pKa = 10.95FNNDD118 pKa = 2.46FSQFLVASQQPDD130 pKa = 3.62FLSNFAPAVPISNMYY145 pKa = 9.98VPGEE149 pKa = 4.05NVPGEE154 pKa = 4.21NVPGEE159 pKa = 4.16NVPGEE164 pKa = 4.42KK165 pKa = 10.18EE166 pKa = 4.0NQQ168 pKa = 3.16

Molecular weight: 18.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5K6|A0A4P8W5K6_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_168 OX=2585403 PE=4 SV=1
MM1 pKa = 7.18TCYY4 pKa = 10.43HH5 pKa = 6.5PLKK8 pKa = 10.64RR9 pKa = 11.84FTTGFNPEE17 pKa = 3.91TGKK20 pKa = 11.07SIGKK24 pKa = 8.06VVPYY28 pKa = 10.39RR29 pKa = 11.84VDD31 pKa = 3.24HH32 pKa = 6.14LEE34 pKa = 3.64KK35 pKa = 10.43RR36 pKa = 11.84YY37 pKa = 10.7GDD39 pKa = 3.37DD40 pKa = 4.05RR41 pKa = 11.84FYY43 pKa = 11.3QVYY46 pKa = 10.76DD47 pKa = 3.44PVDD50 pKa = 3.46YY51 pKa = 7.82TTYY54 pKa = 10.17TINGTKK60 pKa = 9.97FEE62 pKa = 4.31NMPLKK67 pKa = 10.61PSDD70 pKa = 3.2VRR72 pKa = 11.84IYY74 pKa = 10.96SDD76 pKa = 4.3YY77 pKa = 11.44EE78 pKa = 4.05VIPCGKK84 pKa = 10.37CIGCRR89 pKa = 11.84LDD91 pKa = 3.48YY92 pKa = 11.29SRR94 pKa = 11.84MWSSRR99 pKa = 11.84LMAEE103 pKa = 4.63LPYY106 pKa = 10.6HH107 pKa = 6.1HH108 pKa = 6.73EE109 pKa = 3.91AWFLTLTYY117 pKa = 10.95NDD119 pKa = 4.11LCLPSHH125 pKa = 5.86IVEE128 pKa = 4.24RR129 pKa = 11.84DD130 pKa = 3.21GKK132 pKa = 10.67LVEE135 pKa = 4.14THH137 pKa = 6.52SLVKK141 pKa = 10.55KK142 pKa = 10.05HH143 pKa = 6.02FQDD146 pKa = 3.16FMKK149 pKa = 10.42RR150 pKa = 11.84LRR152 pKa = 11.84RR153 pKa = 11.84RR154 pKa = 11.84FPDD157 pKa = 3.66GSIKK161 pKa = 10.52YY162 pKa = 7.41YY163 pKa = 10.8CCGEE167 pKa = 4.16YY168 pKa = 10.47GSKK171 pKa = 10.46SMRR174 pKa = 11.84PHH176 pKa = 4.77YY177 pKa = 10.13HH178 pKa = 6.99AILFFDD184 pKa = 5.04SSLQDD189 pKa = 3.29YY190 pKa = 8.01VFPNGVINTNKK201 pKa = 9.44LHH203 pKa = 6.41KK204 pKa = 10.38VQDD207 pKa = 3.81GYY209 pKa = 11.32RR210 pKa = 11.84YY211 pKa = 9.64YY212 pKa = 11.36VNRR215 pKa = 11.84LIDD218 pKa = 3.71QLWYY222 pKa = 11.07VSDD225 pKa = 4.71CPDD228 pKa = 2.94VSAGFHH234 pKa = 6.45YY235 pKa = 9.28LTQVTYY241 pKa = 8.59EE242 pKa = 4.16TICYY246 pKa = 6.19VTQYY250 pKa = 8.28VTKK253 pKa = 10.41KK254 pKa = 10.55LNGDD258 pKa = 3.47AASIYY263 pKa = 9.84QEE265 pKa = 3.94YY266 pKa = 10.72DD267 pKa = 3.25LEE269 pKa = 4.8PEE271 pKa = 4.26FSLISTKK278 pKa = 10.19PALGRR283 pKa = 11.84QFYY286 pKa = 9.58EE287 pKa = 3.68EE288 pKa = 4.44HH289 pKa = 6.54KK290 pKa = 11.16AEE292 pKa = 4.66IYY294 pKa = 11.04ADD296 pKa = 3.47DD297 pKa = 4.18KK298 pKa = 11.52FVFEE302 pKa = 5.11SNGKK306 pKa = 8.5PVIFRR311 pKa = 11.84PPAYY315 pKa = 9.65YY316 pKa = 10.63DD317 pKa = 3.21HH318 pKa = 7.17LFDD321 pKa = 5.32IEE323 pKa = 4.3APEE326 pKa = 4.38IMSQKK331 pKa = 9.57KK332 pKa = 10.06DD333 pKa = 3.3KK334 pKa = 10.89RR335 pKa = 11.84KK336 pKa = 9.6EE337 pKa = 3.49LAINHH342 pKa = 5.44VDD344 pKa = 3.16ALLRR348 pKa = 11.84QTDD351 pKa = 3.28KK352 pKa = 11.23DD353 pKa = 4.06YY354 pKa = 10.93PAILADD360 pKa = 3.5QEE362 pKa = 4.77SAFKK366 pKa = 10.78SRR368 pKa = 11.84ASSRR372 pKa = 11.84MKK374 pKa = 10.68AKK376 pKa = 10.32YY377 pKa = 9.92NKK379 pKa = 10.08AKK381 pKa = 9.9GRR383 pKa = 11.84RR384 pKa = 11.84VV385 pKa = 3.1

Molecular weight: 45.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1479

107

598

295.8

33.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.384 ± 2.346

1.014 ± 0.42

6.829 ± 0.624

5.477 ± 0.694

5.341 ± 0.369

6.558 ± 0.775

2.366 ± 0.392

5.341 ± 0.477

5.139 ± 0.907

6.694 ± 0.471

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.164 ± 0.105

5.274 ± 1.038

5.003 ± 0.732

3.854 ± 0.38

4.124 ± 0.736

7.911 ± 0.99

5.274 ± 0.198

5.68 ± 0.77

0.947 ± 0.184

6.626 ± 0.586
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski