Turkey aviadenovirus 4

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Preplasmiviricota; Tectiliviricetes; Rowavirales; Adenoviridae; Aviadenovirus; Turkey aviadenovirus C

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 33 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U5NHL0|U5NHL0_9ADEN ORF8 OS=Turkey aviadenovirus 4 OX=1408257 PE=4 SV=1
MM1 pKa = 7.51SSAPFHH7 pKa = 6.34GMSISGRR14 pKa = 11.84KK15 pKa = 9.14RR16 pKa = 11.84SSNASNDD23 pKa = 2.91EE24 pKa = 4.15AEE26 pKa = 4.42PVKK29 pKa = 10.72APKK32 pKa = 9.81LQAGARR38 pKa = 11.84VTINAQNAEE47 pKa = 4.35LDD49 pKa = 3.61LVYY52 pKa = 10.23PFWYY56 pKa = 9.92EE57 pKa = 3.97STSTGGNPSVNPPLLDD73 pKa = 3.61PSGPLYY79 pKa = 10.46VQSNMLKK86 pKa = 9.83VRR88 pKa = 11.84TAAPVEE94 pKa = 4.2VANGSITLAYY104 pKa = 10.41DD105 pKa = 3.33DD106 pKa = 5.01TLTLDD111 pKa = 4.58DD112 pKa = 4.52QNKK115 pKa = 9.39LQINVEE121 pKa = 4.15PNGPLRR127 pKa = 11.84STPDD131 pKa = 3.54GLDD134 pKa = 3.33LAIDD138 pKa = 3.66STLEE142 pKa = 3.58VDD144 pKa = 3.05NWEE147 pKa = 4.85LGVKK151 pKa = 10.0LNPAGPIDD159 pKa = 4.01ASAAGLDD166 pKa = 3.6INVDD170 pKa = 3.42EE171 pKa = 4.61TLLVAEE177 pKa = 5.32DD178 pKa = 3.9STNQRR183 pKa = 11.84YY184 pKa = 8.55EE185 pKa = 4.22LGVHH189 pKa = 6.76LNPNGPITADD199 pKa = 3.23SDD201 pKa = 4.26GLDD204 pKa = 3.85LEE206 pKa = 5.04INPEE210 pKa = 4.17TLTVTNDD217 pKa = 3.11SNTGGVLSVVLKK229 pKa = 9.94PQGGLQSSLLGIGVAVDD246 pKa = 3.38RR247 pKa = 11.84TLTIDD252 pKa = 3.31QNTVEE257 pKa = 4.4VKK259 pKa = 10.08IDD261 pKa = 3.36PTGPLTSSDD270 pKa = 3.46NGLSLDD276 pKa = 3.71YY277 pKa = 9.8DD278 pKa = 3.8TTDD281 pKa = 3.83FSVQAGKK288 pKa = 10.8LSLLKK293 pKa = 10.17TPTVSANAKK302 pKa = 7.85LTSGSSTMTAFSAYY316 pKa = 8.97IANSSQQNFNCSYY329 pKa = 11.1YY330 pKa = 9.65LQQWLVDD337 pKa = 3.8GLIMTSLYY345 pKa = 10.8LKK347 pKa = 10.26LDD349 pKa = 3.66RR350 pKa = 11.84AHH352 pKa = 6.92FSNMGSDD359 pKa = 3.31EE360 pKa = 4.2SSRR363 pKa = 11.84NAKK366 pKa = 8.79WFTFWISSTSNFNLSNISEE385 pKa = 4.26PTIEE389 pKa = 4.46PSTVQWNAFLPASNYY404 pKa = 8.38SQPASFQYY412 pKa = 7.27TTSGGVTNMYY422 pKa = 8.54YY423 pKa = 10.08QPSSGAMQTFLPVTTGDD440 pKa = 3.7WANTTYY446 pKa = 11.25DD447 pKa = 3.7PGSVNICALPVSVASSASSSRR468 pKa = 11.84MMICFNFRR476 pKa = 11.84CTNSGIFNSNATTGTMSIGPIFFTCPASAYY506 pKa = 7.25TAPP509 pKa = 4.03

Molecular weight: 54.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U5NHK2|U5NHK2_9ADEN DNA-binding protein OS=Turkey aviadenovirus 4 OX=1408257 GN=DBP PE=3 SV=1
MM1 pKa = 7.68SILISPNDD9 pKa = 3.25NRR11 pKa = 11.84GWGMRR16 pKa = 11.84RR17 pKa = 11.84RR18 pKa = 11.84SRR20 pKa = 11.84SSMRR24 pKa = 11.84GVGTRR29 pKa = 11.84RR30 pKa = 11.84PRR32 pKa = 11.84RR33 pKa = 11.84SRR35 pKa = 11.84MTLRR39 pKa = 11.84TLLGLGTVSRR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84RR52 pKa = 11.84NRR54 pKa = 11.84RR55 pKa = 11.84TRR57 pKa = 11.84RR58 pKa = 11.84RR59 pKa = 11.84SSRR62 pKa = 11.84PASTTSRR69 pKa = 11.84LVVVRR74 pKa = 11.84TRR76 pKa = 11.84RR77 pKa = 11.84GGRR80 pKa = 3.17

Molecular weight: 9.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

32

1

33

12730

67

1268

385.8

43.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.913 ± 0.376

1.948 ± 0.246

5.499 ± 0.224

5.907 ± 0.441

4.108 ± 0.27

5.947 ± 0.332

2.537 ± 0.313

4.478 ± 0.17

4.116 ± 0.377

8.578 ± 0.4

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.632 ± 0.173

4.588 ± 0.319

6.19 ± 0.288

3.778 ± 0.192

6.701 ± 0.458

7.714 ± 0.413

6.237 ± 0.364

6.394 ± 0.318

1.445 ± 0.14

4.289 ± 0.278
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski