Torque teno midi virus

Taxonomy: Viruses; Anelloviridae; unclassified Anelloviridae

Average proteome isoelectric point is 7.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7VLX2|A7VLX2_9VIRU Capsid protein OS=Torque teno midi virus OX=432261 PE=3 SV=1
MM1 pKa = 7.38QNICAKK7 pKa = 10.8DD8 pKa = 3.5FFTPTNFNCDD18 pKa = 3.24TKK20 pKa = 10.8NQLWMSIIADD30 pKa = 3.76SHH32 pKa = 7.9DD33 pKa = 4.39SICNCWHH40 pKa = 7.17PFAHH44 pKa = 6.23MLASIFPPGHH54 pKa = 6.28SDD56 pKa = 3.26RR57 pKa = 11.84NHH59 pKa = 6.24TIEE62 pKa = 5.62EE63 pKa = 4.0ILQRR67 pKa = 11.84DD68 pKa = 3.91YY69 pKa = 11.59KK70 pKa = 10.26EE71 pKa = 4.2RR72 pKa = 11.84CHH74 pKa = 8.07SGGHH78 pKa = 6.54ADD80 pKa = 3.86ASHH83 pKa = 6.24GMEE86 pKa = 4.9DD87 pKa = 3.22SGAATGTDD95 pKa = 3.64PIKK98 pKa = 10.72RR99 pKa = 11.84EE100 pKa = 3.9EE101 pKa = 4.42GEE103 pKa = 4.43EE104 pKa = 3.83EE105 pKa = 4.1DD106 pKa = 4.94LPEE109 pKa = 4.19EE110 pKa = 4.58EE111 pKa = 4.73ISKK114 pKa = 10.53LLAAAAEE121 pKa = 4.3EE122 pKa = 4.83GTRR125 pKa = 3.81

Molecular weight: 13.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7VLX1|A7VLX1_9VIRU Uncharacterized protein OS=Torque teno midi virus OX=432261 PE=4 SV=1
MM1 pKa = 7.38QNICAKK7 pKa = 10.8DD8 pKa = 3.5FFTPTNFNCDD18 pKa = 3.24TKK20 pKa = 10.8NQLWMSIIADD30 pKa = 3.76SHH32 pKa = 7.9DD33 pKa = 4.39SICNCWHH40 pKa = 7.17PFAHH44 pKa = 6.23MLASIFPPGHH54 pKa = 6.28SDD56 pKa = 3.26RR57 pKa = 11.84NHH59 pKa = 6.24TIEE62 pKa = 5.62EE63 pKa = 4.0ILQRR67 pKa = 11.84DD68 pKa = 3.91YY69 pKa = 11.59KK70 pKa = 10.26EE71 pKa = 4.2RR72 pKa = 11.84CHH74 pKa = 8.07SGGHH78 pKa = 6.54ADD80 pKa = 3.86ASHH83 pKa = 6.24GMEE86 pKa = 4.9DD87 pKa = 3.22SGAATGTDD95 pKa = 3.64PIKK98 pKa = 10.72RR99 pKa = 11.84EE100 pKa = 3.9EE101 pKa = 4.42GEE103 pKa = 4.43EE104 pKa = 3.83EE105 pKa = 4.1DD106 pKa = 4.94LPEE109 pKa = 4.19EE110 pKa = 4.58EE111 pKa = 4.73ISKK114 pKa = 10.53LLAAAAEE121 pKa = 4.33EE122 pKa = 4.72GTSGVAHH129 pKa = 7.18KK130 pKa = 10.11QQIHH134 pKa = 5.05QLMTQNYY141 pKa = 7.29NQHH144 pKa = 5.1MMYY147 pKa = 9.85PVCSKK152 pKa = 10.51KK153 pKa = 10.2QYY155 pKa = 10.8KK156 pKa = 10.25LRR158 pKa = 11.84IQKK161 pKa = 9.45NKK163 pKa = 8.3PQNPFSTPGTSEE175 pKa = 3.63GGLLHH180 pKa = 7.35KK181 pKa = 10.32EE182 pKa = 3.96LLKK185 pKa = 10.75EE186 pKa = 4.03CQKK189 pKa = 10.98ASKK192 pKa = 10.19LIHH195 pKa = 6.65LSNLMIQKK203 pKa = 9.17HH204 pKa = 3.64QRR206 pKa = 11.84KK207 pKa = 8.99RR208 pKa = 11.84KK209 pKa = 9.06RR210 pKa = 11.84SPKK213 pKa = 9.82HH214 pKa = 4.99SQTTKK219 pKa = 10.22SKK221 pKa = 9.67RR222 pKa = 11.84KK223 pKa = 8.85RR224 pKa = 11.84YY225 pKa = 9.79RR226 pKa = 11.84NVSSLSAKK234 pKa = 10.24AISAKK239 pKa = 10.17KK240 pKa = 10.06KK241 pKa = 9.79PPTSKK246 pKa = 9.24STSSSSSSSSSSSNKK261 pKa = 9.11TSTSSSSTSSS271 pKa = 2.93

Molecular weight: 30.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1319

125

665

329.8

37.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.217 ± 1.822

2.426 ± 0.26

4.625 ± 0.741

6.368 ± 1.137

4.397 ± 0.78

5.004 ± 0.292

3.26 ± 1.118

4.852 ± 0.353

8.567 ± 1.028

6.823 ± 0.825

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.971 ± 0.448

4.701 ± 0.22

6.672 ± 0.922

5.838 ± 0.938

5.914 ± 0.738

7.278 ± 2.794

6.596 ± 0.205

2.805 ± 1.099

1.82 ± 0.503

3.867 ± 1.461
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski