Zalophus californianus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Dyonupapillomavirus; Dyonupapillomavirus 1

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F2X1C4|F2X1C4_9PAPI Replication protein E1 OS=Zalophus californianus papillomavirus 1 OX=998829 GN=E1 PE=3 SV=1
MM1 pKa = 7.34IGKK4 pKa = 8.5EE5 pKa = 3.95ATLKK9 pKa = 10.97DD10 pKa = 3.43IVLEE14 pKa = 4.13EE15 pKa = 4.22QPTVADD21 pKa = 4.33EE22 pKa = 4.32LWCDD26 pKa = 3.46EE27 pKa = 4.24EE28 pKa = 4.96LPPEE32 pKa = 4.08EE33 pKa = 5.06AEE35 pKa = 3.97PDD37 pKa = 2.88RR38 pKa = 11.84RR39 pKa = 11.84APYY42 pKa = 9.45KK43 pKa = 8.84VHH45 pKa = 7.31AYY47 pKa = 9.98CGYY50 pKa = 9.24CKK52 pKa = 10.23RR53 pKa = 11.84GVRR56 pKa = 11.84LVIYY60 pKa = 10.14SDD62 pKa = 3.34TDD64 pKa = 3.71SVQKK68 pKa = 9.92LHH70 pKa = 7.09RR71 pKa = 11.84LLLGPFDD78 pKa = 4.24IVCPPCAVRR87 pKa = 11.84CRR89 pKa = 11.84YY90 pKa = 10.4NNGSS94 pKa = 3.25

Molecular weight: 10.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F2X1C7|F2X1C7_9PAPI Minor capsid protein L2 OS=Zalophus californianus papillomavirus 1 OX=998829 GN=L2 PE=3 SV=1
MM1 pKa = 6.08VTSYY5 pKa = 11.47SPLWTLSPALHH16 pKa = 6.75RR17 pKa = 11.84PPTAAEE23 pKa = 3.97RR24 pKa = 11.84LRR26 pKa = 11.84GLLEE30 pKa = 4.25GLPPTDD36 pKa = 4.01LPYY39 pKa = 10.73PPGAWGPLPTTHH51 pKa = 7.15LPGPSIYY58 pKa = 10.48DD59 pKa = 3.32QEE61 pKa = 4.58QPLPPPQPLPRR72 pKa = 11.84RR73 pKa = 11.84RR74 pKa = 11.84RR75 pKa = 11.84RR76 pKa = 11.84PTLRR80 pKa = 11.84EE81 pKa = 3.4QRR83 pKa = 11.84QALNDD88 pKa = 3.6TLKK91 pKa = 10.67QVEE94 pKa = 4.12KK95 pKa = 10.78DD96 pKa = 2.91AWTLRR101 pKa = 11.84TDD103 pKa = 3.9ILGDD107 pKa = 3.58LDD109 pKa = 4.31NFFDD113 pKa = 4.32KK114 pKa = 11.18LGIVPRR120 pKa = 11.84QQ121 pKa = 3.07

Molecular weight: 13.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2412

94

629

344.6

38.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.126 ± 0.908

1.99 ± 0.672

5.887 ± 0.469

5.846 ± 0.499

3.275 ± 0.486

8.416 ± 0.658

2.322 ± 0.315

3.151 ± 0.355

3.317 ± 0.61

8.748 ± 0.694

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.41 ± 0.384

2.861 ± 0.471

8.043 ± 1.172

4.478 ± 0.707

7.96 ± 0.599

6.509 ± 0.893

6.219 ± 0.425

6.177 ± 1.346

1.783 ± 0.422

3.483 ± 0.289
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski