Gottschalkia acidurici (strain ATCC 7906 / DSM 604 / BCRC 14475 / CIP 104303 / KCTC 5404 / NCIMB 10678 / 9a) (Clostridium acidurici)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Tissierellia; Tissierellales; Gottschalkiaceae; Gottschalkia; Gottschalkia acidurici

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2839 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K0B1Q9|K0B1Q9_GOTA9 Uncharacterized protein OS=Gottschalkia acidurici (strain ATCC 7906 / DSM 604 / BCRC 14475 / CIP 104303 / KCTC 5404 / NCIMB 10678 / 9a) OX=1128398 GN=Curi_c20480 PE=4 SV=1
MM1 pKa = 7.7KK2 pKa = 9.48FTGSNIAYY10 pKa = 9.95DD11 pKa = 4.2NYY13 pKa = 10.39TLDD16 pKa = 3.59VGNHH20 pKa = 4.92VLNGKK25 pKa = 9.44YY26 pKa = 10.25NSLDD30 pKa = 3.71LEE32 pKa = 4.45VSSNNINATINLEE45 pKa = 3.79GTYY48 pKa = 10.41GVEE51 pKa = 4.34FEE53 pKa = 4.52VDD55 pKa = 3.31SLSINDD61 pKa = 3.22VDD63 pKa = 4.83VSIKK67 pKa = 9.45GSNMIVDD74 pKa = 4.91DD75 pKa = 3.68IVYY78 pKa = 10.36GVTNN82 pKa = 4.23

Molecular weight: 8.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K0B306|K0B306_GOTA9 Amino acid ABC transporter permease protein YxeN OS=Gottschalkia acidurici (strain ATCC 7906 / DSM 604 / BCRC 14475 / CIP 104303 / KCTC 5404 / NCIMB 10678 / 9a) OX=1128398 GN=yxeN PE=3 SV=1
MM1 pKa = 7.7AGGRR5 pKa = 11.84KK6 pKa = 8.63FRR8 pKa = 11.84SRR10 pKa = 11.84KK11 pKa = 9.08RR12 pKa = 11.84VCSFCADD19 pKa = 3.43KK20 pKa = 11.44NNNEE24 pKa = 3.75ISYY27 pKa = 11.19KK28 pKa = 10.55DD29 pKa = 3.5VNKK32 pKa = 10.27LKK34 pKa = 10.66KK35 pKa = 10.37YY36 pKa = 6.92VTEE39 pKa = 4.26RR40 pKa = 11.84GKK42 pKa = 10.15ILPRR46 pKa = 11.84RR47 pKa = 11.84ISGNCAIHH55 pKa = 5.88QRR57 pKa = 11.84KK58 pKa = 7.58LTIAIKK64 pKa = 10.18RR65 pKa = 11.84ARR67 pKa = 11.84QIAILPYY74 pKa = 8.74TTDD77 pKa = 2.74

Molecular weight: 8.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2839

0

2839

845889

44

1892

298.0

33.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.982 ± 0.041

0.958 ± 0.017

5.814 ± 0.042

7.788 ± 0.056

4.035 ± 0.034

6.39 ± 0.051

1.374 ± 0.019

10.536 ± 0.054

8.97 ± 0.049

9.142 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.554 ± 0.021

5.947 ± 0.041

2.726 ± 0.026

2.419 ± 0.019

3.569 ± 0.027

6.755 ± 0.036

5.018 ± 0.035

6.439 ± 0.043

0.638 ± 0.013

3.947 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski