Strongylus vulgaris (Blood worm)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Strongylida; Strongyloidea; Strongylidae; Strongylinae; Strongylus

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 20844 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P7J8P8|A0A3P7J8P8_STRVU Pyr_redox domain-containing protein OS=Strongylus vulgaris OX=40348 GN=SVUK_LOCUS16759 PE=4 SV=1
MM1 pKa = 7.2GVEE4 pKa = 4.25EE5 pKa = 4.75SPAVTAAPQGVCCGCGVSPQGPPGPPGPDD34 pKa = 3.38GEE36 pKa = 4.63NGADD40 pKa = 3.92GAPGAPGKK48 pKa = 10.19DD49 pKa = 3.79GPDD52 pKa = 3.63GPLPTPPPQHH62 pKa = 6.29EE63 pKa = 4.49FCFDD67 pKa = 3.93CPDD70 pKa = 4.23GPPGAPGNPGPKK82 pKa = 9.89GPPGPPGAPGADD94 pKa = 3.14ADD96 pKa = 4.26GGSRR100 pKa = 11.84GPPGPPGPPGPPGPDD115 pKa = 3.18GAPGNAGAPGAPGKK129 pKa = 10.54LNEE132 pKa = 4.45VPGPDD137 pKa = 4.46GPPGPPGPQGPPGPDD152 pKa = 3.27GQPGANGNPGQDD164 pKa = 3.64GAPGQPGDD172 pKa = 4.63DD173 pKa = 4.16GAPGAPGQPGPAGPAGPDD191 pKa = 3.56GDD193 pKa = 4.1RR194 pKa = 11.84GPSGGCDD201 pKa = 2.86HH202 pKa = 7.24CPPPRR207 pKa = 11.84TAPGYY212 pKa = 10.37

Molecular weight: 19.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P7L5J8|A0A3P7L5J8_STRVU Uncharacterized protein OS=Strongylus vulgaris OX=40348 GN=SVUK_LOCUS9680 PE=4 SV=1
MM1 pKa = 6.74KK2 pKa = 9.72TKK4 pKa = 9.72TRR6 pKa = 11.84TRR8 pKa = 11.84IRR10 pKa = 11.84TKK12 pKa = 7.9TKK14 pKa = 10.33RR15 pKa = 11.84RR16 pKa = 11.84ITKK19 pKa = 7.79TRR21 pKa = 11.84TRR23 pKa = 11.84IKK25 pKa = 9.69MIRR28 pKa = 11.84IKK30 pKa = 10.39RR31 pKa = 11.84KK32 pKa = 9.22RR33 pKa = 11.84KK34 pKa = 8.29HH35 pKa = 4.12QRR37 pKa = 11.84KK38 pKa = 8.55MIRR41 pKa = 11.84KK42 pKa = 7.98RR43 pKa = 11.84KK44 pKa = 8.08RR45 pKa = 11.84IRR47 pKa = 11.84RR48 pKa = 11.84IKK50 pKa = 9.76MMRR53 pKa = 11.84LKK55 pKa = 10.54SRR57 pKa = 11.84SQIKK61 pKa = 10.07SS62 pKa = 3.08

Molecular weight: 8.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

20844

0

20844

3866246

27

2583

185.5

20.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.133 ± 0.018

2.089 ± 0.016

5.291 ± 0.015

6.642 ± 0.025

4.265 ± 0.016

5.8 ± 0.024

2.364 ± 0.01

5.55 ± 0.016

5.723 ± 0.023

9.106 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.727 ± 0.011

4.079 ± 0.012

5.138 ± 0.023

3.839 ± 0.016

5.956 ± 0.018

7.666 ± 0.023

5.505 ± 0.018

6.704 ± 0.021

1.139 ± 0.007

3.081 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski