Capybara microvirus Cap3_SP_478

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W630|A0A4P8W630_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_478 OX=2585468 PE=4 SV=1
MM1 pKa = 7.62VNIKK5 pKa = 10.47YY6 pKa = 10.58SDD8 pKa = 3.27IAPILGEE15 pKa = 4.45HH16 pKa = 5.37YY17 pKa = 11.14LEE19 pKa = 4.75FKK21 pKa = 11.14FNGVWLKK28 pKa = 10.11TSILNNTDD36 pKa = 2.92SNNIVSIFMLNGEE49 pKa = 4.55DD50 pKa = 4.54LYY52 pKa = 11.69CEE54 pKa = 4.32VKK56 pKa = 10.59YY57 pKa = 10.74HH58 pKa = 6.98EE59 pKa = 4.61LLQYY63 pKa = 11.21VLVKK67 pKa = 9.58HH68 pKa = 6.25ICSDD72 pKa = 3.83YY73 pKa = 11.47YY74 pKa = 11.25DD75 pKa = 4.36IDD77 pKa = 3.05WDD79 pKa = 3.65YY80 pKa = 11.64SYY82 pKa = 11.92NEE84 pKa = 4.22VIEE87 pKa = 4.82CEE89 pKa = 4.32CEE91 pKa = 4.19VNFLNGEE98 pKa = 4.11EE99 pKa = 4.18NKK101 pKa = 10.29FF102 pKa = 3.5

Molecular weight: 12.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8R3|A0A4P8W8R3_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_478 OX=2585468 PE=3 SV=1
MM1 pKa = 7.56CVNPIKK7 pKa = 10.37CWQYY11 pKa = 11.4YY12 pKa = 6.65EE13 pKa = 4.34TDD15 pKa = 3.43SLTGEE20 pKa = 4.42EE21 pKa = 4.14KK22 pKa = 9.28THH24 pKa = 7.0LVFNINKK31 pKa = 8.99TSFNKK36 pKa = 10.63DD37 pKa = 2.08KK38 pKa = 10.85DD39 pKa = 3.86YY40 pKa = 11.54SVEE43 pKa = 4.07QKK45 pKa = 11.11LEE47 pKa = 3.84DD48 pKa = 3.84LYY50 pKa = 10.97IPGRR54 pKa = 11.84NQKK57 pKa = 10.18LYY59 pKa = 10.51NRR61 pKa = 11.84RR62 pKa = 11.84IKK64 pKa = 10.5PITLPCGKK72 pKa = 10.38CPDD75 pKa = 4.08CLMKK79 pKa = 10.94YY80 pKa = 9.4SLEE83 pKa = 3.64WAYY86 pKa = 11.05RR87 pKa = 11.84IMNEE91 pKa = 3.3ASYY94 pKa = 10.75YY95 pKa = 10.99AEE97 pKa = 4.13NCFMTLTYY105 pKa = 11.19ANTNGEE111 pKa = 4.37LCLKK115 pKa = 10.36DD116 pKa = 2.97IQNFLKK122 pKa = 10.63RR123 pKa = 11.84LRR125 pKa = 11.84KK126 pKa = 9.78KK127 pKa = 10.5ISPLKK132 pKa = 10.38IRR134 pKa = 11.84FFNCGEE140 pKa = 3.97YY141 pKa = 10.46GSKK144 pKa = 10.27GKK146 pKa = 10.24RR147 pKa = 11.84PHH149 pKa = 5.59FHH151 pKa = 7.07CIIFGWCPSDD161 pKa = 4.85LKK163 pKa = 10.97FLKK166 pKa = 9.02KK167 pKa = 8.76TKK169 pKa = 9.72KK170 pKa = 10.11GQIIYY175 pKa = 9.24TSEE178 pKa = 3.86IVSSLWKK185 pKa = 10.35HH186 pKa = 5.31GFVSIGNVEE195 pKa = 4.19FEE197 pKa = 4.41SAKK200 pKa = 9.4YY201 pKa = 7.37TALYY205 pKa = 7.84MQKK208 pKa = 10.01LHH210 pKa = 6.84KK211 pKa = 10.75FPDD214 pKa = 3.55KK215 pKa = 10.52KK216 pKa = 10.76VQPFLTMSNRR226 pKa = 11.84PGIGYY231 pKa = 9.92KK232 pKa = 10.22YY233 pKa = 11.07VLDD236 pKa = 4.17KK237 pKa = 11.47KK238 pKa = 10.16NTLLLTDD245 pKa = 3.81KK246 pKa = 10.84VYY248 pKa = 11.53NNGKK252 pKa = 9.94DD253 pKa = 3.24IPLPRR258 pKa = 11.84YY259 pKa = 7.94YY260 pKa = 10.98LKK262 pKa = 10.89VLEE265 pKa = 4.18NQQYY269 pKa = 10.95CDD271 pKa = 3.26TSTLRR276 pKa = 11.84VNRR279 pKa = 11.84EE280 pKa = 3.65KK281 pKa = 10.93KK282 pKa = 9.81KK283 pKa = 10.84DD284 pKa = 3.91LILEE288 pKa = 4.24EE289 pKa = 4.4EE290 pKa = 4.11NVRR293 pKa = 11.84AYY295 pKa = 9.88KK296 pKa = 9.87LAKK299 pKa = 9.52YY300 pKa = 10.26DD301 pKa = 5.32KK302 pKa = 9.71LLHH305 pKa = 6.06WKK307 pKa = 10.05LEE309 pKa = 4.26KK310 pKa = 10.94GDD312 pKa = 3.73TT313 pKa = 3.72

Molecular weight: 37.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1609

77

543

201.1

22.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.588 ± 1.581

1.678 ± 0.581

6.091 ± 0.659

6.091 ± 1.249

4.288 ± 0.474

5.594 ± 0.762

1.492 ± 0.427

5.842 ± 0.649

7.396 ± 1.825

8.452 ± 0.932

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.175 ± 0.294

8.266 ± 0.802

3.045 ± 0.951

3.418 ± 0.613

3.418 ± 0.642

7.023 ± 1.02

5.158 ± 0.494

6.339 ± 0.874

1.305 ± 0.163

6.339 ± 0.354
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski