Trichechus manatus papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Rhopapillomavirus; Rhopapillomavirus 1

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5UUY5|Q5UUY5_9PAPI Protein E6 OS=Trichechus manatus papillomavirus 1 OX=291589 GN=E6 PE=3 SV=1
MM1 pKa = 7.43HH2 pKa = 7.78GDD4 pKa = 3.23HH5 pKa = 6.62ATIPDD10 pKa = 3.83ILLEE14 pKa = 4.39ALDD17 pKa = 4.4LTPHH21 pKa = 5.24IQEE24 pKa = 4.6YY25 pKa = 10.6ADD27 pKa = 3.88SSAFDD32 pKa = 4.19LLCHH36 pKa = 6.64EE37 pKa = 5.05NLDD40 pKa = 3.95DD41 pKa = 5.02PEE43 pKa = 4.26VEE45 pKa = 4.08EE46 pKa = 5.0VKK48 pKa = 10.45EE49 pKa = 3.95QEE51 pKa = 4.03KK52 pKa = 11.42AEE54 pKa = 4.34DD55 pKa = 3.56SGCARR60 pKa = 11.84TYY62 pKa = 10.09YY63 pKa = 9.95QVEE66 pKa = 4.83SICGGCDD73 pKa = 2.92KK74 pKa = 10.74PVAAVVLATHH84 pKa = 6.61TGIFSLNEE92 pKa = 3.62NLFTEE97 pKa = 4.64LFFVCLSCAQRR108 pKa = 11.84EE109 pKa = 5.08GYY111 pKa = 10.57RR112 pKa = 11.84NDD114 pKa = 3.25GG115 pKa = 3.55

Molecular weight: 12.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q5UUY2|Q5UUY2_9PAPI Regulatory protein E2 OS=Trichechus manatus papillomavirus 1 OX=291589 GN=E2 PE=3 SV=1
MM1 pKa = 7.4MEE3 pKa = 3.93TRR5 pKa = 11.84LCFLPSLLVPLSTSAGTQSQTDD27 pKa = 3.7PHH29 pKa = 6.78PLPPEE34 pKa = 4.7TYY36 pKa = 9.02PSHH39 pKa = 7.2PLDD42 pKa = 4.21PSPVEE47 pKa = 4.4GPPPTHH53 pKa = 7.21PSPIPRR59 pKa = 11.84SPYY62 pKa = 10.01PQDD65 pKa = 3.25QHH67 pKa = 6.67PSLAFGAYY75 pKa = 9.27HH76 pKa = 6.56PPIPGEE82 pKa = 3.76PHH84 pKa = 6.19RR85 pKa = 11.84RR86 pKa = 11.84GYY88 pKa = 7.8PQRR91 pKa = 11.84RR92 pKa = 11.84LRR94 pKa = 11.84RR95 pKa = 11.84IRR97 pKa = 11.84ATRR100 pKa = 11.84PRR102 pKa = 11.84EE103 pKa = 3.81SATRR107 pKa = 11.84GSWADD112 pKa = 3.26HH113 pKa = 5.9ANIRR117 pKa = 11.84TPTPEE122 pKa = 4.09EE123 pKa = 3.97ALQDD127 pKa = 3.62ALAIILGHH135 pKa = 6.14WEE137 pKa = 3.99GDD139 pKa = 3.17LDD141 pKa = 4.91LLVTSVRR148 pKa = 11.84RR149 pKa = 11.84AVLWYY154 pKa = 9.03LASVGRR160 pKa = 11.84TLL162 pKa = 4.74

Molecular weight: 18.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2472

115

611

353.1

39.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.513 ± 0.389

2.063 ± 0.589

6.068 ± 0.428

5.947 ± 0.614

3.843 ± 0.392

7.16 ± 0.859

2.427 ± 0.509

4.773 ± 0.369

4.167 ± 0.857

9.385 ± 0.854

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.497 ± 0.31

3.479 ± 0.544

7.241 ± 1.175

4.045 ± 0.466

6.108 ± 0.403

7.322 ± 0.799

7.646 ± 0.696

5.218 ± 0.517

1.375 ± 0.316

3.722 ± 0.212
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski