Citrus leprosis virus C (isolate Citrus sinesis/Brazil/Cordeiropolis/2003) (CiLV-C)

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Kitaviridae; Cilevirus; Citrus leprosis virus C

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q1KZ58|P29_CILVC P29 OS=Citrus leprosis virus C (isolate Citrus sinesis/Brazil/Cordeiropolis/2003) OX=686950 GN=p29 PE=4 SV=1
MM1 pKa = 7.4LNWSTIEE8 pKa = 4.21WDD10 pKa = 4.31SFWQQHH16 pKa = 6.14DD17 pKa = 3.98CGCFTFEE24 pKa = 4.92CDD26 pKa = 4.87FITSIDD32 pKa = 4.06PLVHH36 pKa = 7.38DD37 pKa = 3.78YY38 pKa = 11.34AIYY41 pKa = 10.49HH42 pKa = 6.08SLSQKK47 pKa = 9.03TVLEE51 pKa = 4.03MLQTHH56 pKa = 6.61LVAGPDD62 pKa = 3.11ASEE65 pKa = 4.08TIRR68 pKa = 11.84RR69 pKa = 11.84QVAFLIYY76 pKa = 10.14DD77 pKa = 3.6FHH79 pKa = 8.15RR80 pKa = 11.84LSCNCDD86 pKa = 2.78KK87 pKa = 11.24CYY89 pKa = 11.06GDD91 pKa = 5.22CNATTTGRR99 pKa = 11.84FKK101 pKa = 11.3VVDD104 pKa = 3.71RR105 pKa = 11.84VLNDD109 pKa = 3.93HH110 pKa = 6.84IEE112 pKa = 4.01FGIMRR117 pKa = 11.84RR118 pKa = 11.84QDD120 pKa = 4.79LIPILHH126 pKa = 6.24NLEE129 pKa = 4.15TT130 pKa = 4.13

Molecular weight: 15.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q1KZ55|MVP_CILVC Putative movement protein OS=Citrus leprosis virus C (isolate Citrus sinesis/Brazil/Cordeiropolis/2003) OX=686950 GN=MP PE=3 SV=1
MM1 pKa = 8.27DD2 pKa = 4.88AQLLQANKK10 pKa = 10.18RR11 pKa = 11.84LLRR14 pKa = 11.84RR15 pKa = 11.84AANVRR20 pKa = 11.84QRR22 pKa = 11.84YY23 pKa = 9.26KK24 pKa = 10.31MLATEE29 pKa = 4.62SFVADD34 pKa = 3.82IKK36 pKa = 11.1QILLRR41 pKa = 11.84FIQKK45 pKa = 9.55PNVIIMYY52 pKa = 10.01ISVLVLFAAHH62 pKa = 6.95IDD64 pKa = 4.23SNTHH68 pKa = 7.67DD69 pKa = 4.24ILDD72 pKa = 4.23DD73 pKa = 4.2LAAQFPNNTFIEE85 pKa = 4.4WAKK88 pKa = 11.11SNFFRR93 pKa = 11.84ICGALVFIPVIIDD106 pKa = 3.29TEE108 pKa = 4.4EE109 pKa = 3.56KK110 pKa = 9.9HH111 pKa = 6.61RR112 pKa = 11.84NYY114 pKa = 10.28LALVIFVFLMGFPQRR129 pKa = 11.84SIMEE133 pKa = 3.88YY134 pKa = 9.83FIYY137 pKa = 10.5SISFHH142 pKa = 7.15VYY144 pKa = 9.71AKK146 pKa = 10.31AKK148 pKa = 10.45HH149 pKa = 5.03PVTRR153 pKa = 11.84IFIIGAAVFSCVMFGIFTNEE173 pKa = 3.88QLRR176 pKa = 11.84KK177 pKa = 9.98LYY179 pKa = 10.94AEE181 pKa = 4.3LPKK184 pKa = 10.77VPTHH188 pKa = 6.06PVAVNRR194 pKa = 11.84VEE196 pKa = 4.65KK197 pKa = 10.21VANRR201 pKa = 11.84ASRR204 pKa = 11.84VSTEE208 pKa = 3.74GTVNFGG214 pKa = 3.37

Molecular weight: 24.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3953

130

2512

658.8

74.89

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.034 ± 0.966

2.707 ± 0.522

6.704 ± 0.7

5.186 ± 0.239

5.667 ± 0.608

4.882 ± 0.511

2.757 ± 0.225

6.527 ± 0.599

6.046 ± 0.561

9.006 ± 0.431

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.998 ± 0.185

4.376 ± 0.462

3.693 ± 0.598

2.808 ± 0.924

5.515 ± 0.611

8.297 ± 0.785

5.237 ± 0.443

8.677 ± 0.534

0.582 ± 0.139

4.301 ± 0.799
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski