Trichomonas vaginalis virus 3

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Chrymotiviricetes; Ghabrivirales; Totiviridae; Trichomonasvirus

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q8V616|Q8V616_9VIRU Capsid protein OS=Trichomonas vaginalis virus 3 OX=170965 GN=cap PE=4 SV=1
MM1 pKa = 7.71DD2 pKa = 4.73HH3 pKa = 6.88VSDD6 pKa = 3.39IAYY9 pKa = 10.5LNFLRR14 pKa = 11.84WVLLPYY20 pKa = 10.33NGQTLRR26 pKa = 11.84PHH28 pKa = 6.37PSVWRR33 pKa = 11.84QTPYY37 pKa = 10.41PEE39 pKa = 4.17HH40 pKa = 6.9VNLKK44 pKa = 9.82FLNKK48 pKa = 9.83EE49 pKa = 3.83MEE51 pKa = 4.46LEE53 pKa = 4.05LFPLKK58 pKa = 10.34KK59 pKa = 10.48APQADD64 pKa = 3.8LKK66 pKa = 10.02VNCYY70 pKa = 9.75ARR72 pKa = 11.84NVLASTEE79 pKa = 4.1LTDD82 pKa = 5.96DD83 pKa = 4.45LLKK86 pKa = 10.78QSLPIGLNNDD96 pKa = 3.75SVCGIVIVLEE106 pKa = 4.0LLRR109 pKa = 11.84IAGVPSKK116 pKa = 10.22LLPIIGQAIANKK128 pKa = 10.45DD129 pKa = 3.56PFIKK133 pKa = 10.35EE134 pKa = 3.7LSDD137 pKa = 3.55FNKK140 pKa = 10.19MIGATTSRR148 pKa = 11.84IANILTEE155 pKa = 4.37CNTLIGRR162 pKa = 11.84GVKK165 pKa = 10.35SSDD168 pKa = 3.13PSADD172 pKa = 3.1LYY174 pKa = 11.37HH175 pKa = 6.94RR176 pKa = 11.84VAPEE180 pKa = 4.07GNRR183 pKa = 11.84HH184 pKa = 4.74EE185 pKa = 4.79AKK187 pKa = 10.1IPRR190 pKa = 11.84HH191 pKa = 5.28ILIEE195 pKa = 4.73AINKK199 pKa = 9.11IYY201 pKa = 10.19KK202 pKa = 10.2NEE204 pKa = 4.04MTDD207 pKa = 3.39MPPPGDD213 pKa = 3.73FKK215 pKa = 11.52LHH217 pKa = 7.23LITSPLWCKK226 pKa = 10.39AGSHH230 pKa = 5.76HH231 pKa = 6.8HH232 pKa = 5.98PHH234 pKa = 5.93FAKK237 pKa = 10.6YY238 pKa = 10.19SSRR241 pKa = 11.84LDD243 pKa = 3.54FVMDD247 pKa = 3.83VPADD251 pKa = 4.04KK252 pKa = 10.51IAAVPPSVFITQAEE266 pKa = 4.22KK267 pKa = 11.08LEE269 pKa = 4.45HH270 pKa = 6.31GKK272 pKa = 7.86TRR274 pKa = 11.84YY275 pKa = 9.27IYY277 pKa = 10.73NCDD280 pKa = 2.94TXSYY284 pKa = 10.86LFFDD288 pKa = 4.72YY289 pKa = 10.4ILHH292 pKa = 5.57YY293 pKa = 9.68VEE295 pKa = 5.77CVWSNEE301 pKa = 4.08SVLLNPAAMSVEE313 pKa = 4.15RR314 pKa = 11.84FSVLDD319 pKa = 3.52YY320 pKa = 11.16PEE322 pKa = 4.68YY323 pKa = 11.39CMIDD327 pKa = 3.35YY328 pKa = 10.75TDD330 pKa = 4.64FNSQHH335 pKa = 6.02SLEE338 pKa = 4.24SQKK341 pKa = 11.06LVFEE345 pKa = 4.52CLRR348 pKa = 11.84PYY350 pKa = 10.46LPSEE354 pKa = 3.78MHH356 pKa = 7.5PILDD360 pKa = 3.53WCIASMDD367 pKa = 3.45HH368 pKa = 6.37MEE370 pKa = 5.08IGGQHH375 pKa = 6.29WLSTLPSGHH384 pKa = 7.24RR385 pKa = 11.84ATTFINSVLNKK396 pKa = 10.14AYY398 pKa = 10.37LIPYY402 pKa = 9.55IGDD405 pKa = 3.36TTSFHH410 pKa = 6.98CGDD413 pKa = 4.64DD414 pKa = 3.49VLLCGKK420 pKa = 10.09YY421 pKa = 10.12DD422 pKa = 3.77YY423 pKa = 9.52QTLIDD428 pKa = 3.92TLPYY432 pKa = 10.15EE433 pKa = 4.39LNKK436 pKa = 10.4SKK438 pKa = 11.0QSFGPNAEE446 pKa = 3.89FLRR449 pKa = 11.84LHH451 pKa = 6.49RR452 pKa = 11.84RR453 pKa = 11.84AGDD456 pKa = 3.48VIGYY460 pKa = 7.13PSRR463 pKa = 11.84AVSSLVSGNWLSKK476 pKa = 9.65TSWEE480 pKa = 4.11WQPSLISVTNQCNVIISRR498 pKa = 11.84SQLNIRR504 pKa = 11.84FIPAMQQEE512 pKa = 4.32LRR514 pKa = 11.84NRR516 pKa = 11.84YY517 pKa = 7.74IDD519 pKa = 3.86KK520 pKa = 10.07MSEE523 pKa = 4.02PFDD526 pKa = 3.8VGSDD530 pKa = 3.98YY531 pKa = 11.52YY532 pKa = 11.78VMPGCPCYY540 pKa = 10.7SDD542 pKa = 3.74AATTIVPNVPQLEE555 pKa = 4.38CSDD558 pKa = 4.0VPFSQAQKK566 pKa = 10.74VFDD569 pKa = 4.09TMRR572 pKa = 11.84DD573 pKa = 2.99ICPEE577 pKa = 3.87FTTVNDD583 pKa = 3.63VIDD586 pKa = 3.74RR587 pKa = 11.84VLARR591 pKa = 11.84RR592 pKa = 11.84TSNAVKK598 pKa = 10.39NITYY602 pKa = 9.33NVCAPVAPQVCIAVNPAHH620 pKa = 5.92YY621 pKa = 10.32QFLLRR626 pKa = 11.84KK627 pKa = 8.91KK628 pKa = 9.1YY629 pKa = 10.5YY630 pKa = 8.88PRR632 pKa = 11.84EE633 pKa = 4.34HH634 pKa = 6.86IAPPGFDD641 pKa = 4.46DD642 pKa = 3.78STNSKK647 pKa = 10.55LVFSTYY653 pKa = 11.3DD654 pKa = 3.65LAPSIAMKK662 pKa = 10.29SCAVLTPAKK671 pKa = 9.59IICGHH676 pKa = 5.96GLRR679 pKa = 11.84SGG681 pKa = 3.43

Molecular weight: 76.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q8V616|Q8V616_9VIRU Capsid protein OS=Trichomonas vaginalis virus 3 OX=170965 GN=cap PE=4 SV=1
MM1 pKa = 7.64SAPEE5 pKa = 3.95PLNTEE10 pKa = 3.76VRR12 pKa = 11.84SPNGVSEE19 pKa = 5.13AIEE22 pKa = 4.22TQNMAVTQSSVSNEE36 pKa = 3.81IKK38 pKa = 10.69NDD40 pKa = 3.7TQSDD44 pKa = 4.17LQTLKK49 pKa = 10.89KK50 pKa = 10.1QLQPLYY56 pKa = 10.49RR57 pKa = 11.84STDD60 pKa = 3.42FNTLYY65 pKa = 11.07NFFYY69 pKa = 10.84GLDD72 pKa = 3.68VPASTDD78 pKa = 3.36RR79 pKa = 11.84VGHH82 pKa = 6.72AIQRR86 pKa = 11.84NTSVNDD92 pKa = 3.54TNEE95 pKa = 4.11VVSFPLTATVSHH107 pKa = 6.81TFSNTPVPANIQPLQISVADD127 pKa = 3.86DD128 pKa = 3.54SVNYY132 pKa = 10.03EE133 pKa = 3.98LDD135 pKa = 3.46EE136 pKa = 5.04SGTLCPTLDD145 pKa = 3.53SSVHH149 pKa = 4.13VQRR152 pKa = 11.84ATSLASALKK161 pKa = 10.46VKK163 pKa = 9.49LTGEE167 pKa = 4.13IMHH170 pKa = 6.82SDD172 pKa = 3.07SVRR175 pKa = 11.84PVQTPQLIAYY185 pKa = 8.11LFGVLLGVKK194 pKa = 10.02DD195 pKa = 3.44RR196 pKa = 11.84VNIHH200 pKa = 6.66RR201 pKa = 11.84NQPTNLWRR209 pKa = 11.84SLCSPGRR216 pKa = 11.84AAQAKK221 pKa = 9.32PFFDD225 pKa = 3.64EE226 pKa = 4.63FPNNKK231 pKa = 8.84FRR233 pKa = 11.84TGALLAPPLPDD244 pKa = 4.04AGFGPFPAEE253 pKa = 4.19GLNQNSKK260 pKa = 11.14LDD262 pKa = 3.85FRR264 pKa = 11.84SKK266 pKa = 11.0GYY268 pKa = 10.62VFYY271 pKa = 10.75KK272 pKa = 10.02QRR274 pKa = 11.84TYY276 pKa = 11.54NPDD279 pKa = 2.84EE280 pKa = 4.22MNRR283 pKa = 11.84AFWFLWAIYY292 pKa = 10.74NRR294 pKa = 11.84MPEE297 pKa = 4.43DD298 pKa = 3.51FQLSYY303 pKa = 10.62PLNITFCTSEE313 pKa = 4.99LPVQNPMPGADD324 pKa = 3.74AISNEE329 pKa = 4.08QCEE332 pKa = 4.37KK333 pKa = 11.24ALLLLEE339 pKa = 4.32KK340 pKa = 10.74VVLEE344 pKa = 4.41FFNNDD349 pKa = 2.57RR350 pKa = 11.84KK351 pKa = 10.16LAYY354 pKa = 9.58YY355 pKa = 10.1YY356 pKa = 10.73VFKK359 pKa = 10.89GCQFVMRR366 pKa = 11.84PCSCYY371 pKa = 10.16QEE373 pKa = 4.78GGLIRR378 pKa = 11.84KK379 pKa = 9.32ASRR382 pKa = 11.84NVALRR387 pKa = 11.84GFTGIYY393 pKa = 9.4YY394 pKa = 10.72LAGFTDD400 pKa = 4.1QYY402 pKa = 11.72ANMISCAVHH411 pKa = 6.09PGVVGALFQYY421 pKa = 10.39VDD423 pKa = 3.74TMVLQAVFSLSGPKK437 pKa = 9.76LVRR440 pKa = 11.84FAAPPEE446 pKa = 4.07YY447 pKa = 9.62QGRR450 pKa = 11.84HH451 pKa = 4.7ACPFSFVADD460 pKa = 3.73EE461 pKa = 4.67NYY463 pKa = 9.99WGIAPGIEE471 pKa = 3.95AEE473 pKa = 4.23PVGMYY478 pKa = 10.92YY479 pKa = 9.76MDD481 pKa = 5.05IIQRR485 pKa = 11.84KK486 pKa = 8.9AEE488 pKa = 4.0HH489 pKa = 7.02DD490 pKa = 3.84LFIEE494 pKa = 4.3TFMDD498 pKa = 3.63IYY500 pKa = 11.01GSTASIICANIEE512 pKa = 4.06TSLFTSGTNVLNHH525 pKa = 6.67RR526 pKa = 11.84MQKK529 pKa = 10.59DD530 pKa = 3.92FARR533 pKa = 11.84DD534 pKa = 3.49TPKK537 pKa = 10.66PGTLRR542 pKa = 11.84HH543 pKa = 4.59QHH545 pKa = 6.22AIINRR550 pKa = 11.84FHH552 pKa = 6.51EE553 pKa = 4.14PEE555 pKa = 3.61YY556 pKa = 10.65AYY558 pKa = 10.98RR559 pKa = 11.84LGILANGVIPLSGSFEE575 pKa = 3.98VDD577 pKa = 2.52ILKK580 pKa = 10.3EE581 pKa = 4.05AEE583 pKa = 4.13LLVTGEE589 pKa = 5.29DD590 pKa = 3.36IRR592 pKa = 11.84NLPGLRR598 pKa = 11.84CLCTRR603 pKa = 11.84GLDD606 pKa = 3.89AILGLRR612 pKa = 11.84PVQQKK617 pKa = 9.66RR618 pKa = 11.84KK619 pKa = 8.44KK620 pKa = 7.93MCYY623 pKa = 9.74FRR625 pKa = 11.84TLDD628 pKa = 3.76GNFHH632 pKa = 6.62EE633 pKa = 4.59VTIRR637 pKa = 11.84SEE639 pKa = 4.14TRR641 pKa = 11.84DD642 pKa = 3.48LQVWRR647 pKa = 11.84DD648 pKa = 3.47HH649 pKa = 6.8GYY651 pKa = 10.0LARR654 pKa = 11.84PYY656 pKa = 9.41ACHH659 pKa = 6.93IIDD662 pKa = 3.63SEE664 pKa = 4.63GIEE667 pKa = 5.36FYY669 pKa = 10.94DD670 pKa = 4.99KK671 pKa = 11.71SNGLYY676 pKa = 10.01KK677 pKa = 10.83GRR679 pKa = 11.84VNVLVSGFAIPGRR692 pKa = 11.84AYY694 pKa = 10.04QGPRR698 pKa = 11.84LQVATMAAQII708 pKa = 3.98

Molecular weight: 79.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1389

681

708

694.5

78.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.983 ± 0.448

2.448 ± 0.328

5.4 ± 0.318

4.752 ± 0.232

4.68 ± 0.577

5.256 ± 0.767

2.736 ± 0.43

5.976 ± 0.621

4.32 ± 0.451

9.431 ± 0.174

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.232 ± 0.079

5.4 ± 0.174

6.695 ± 0.335

3.96 ± 0.587

5.112 ± 0.473

7.127 ± 0.537

5.256 ± 0.275

6.695 ± 0.059

1.008 ± 0.21

4.464 ± 0.059
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski