Rose yellow vein virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Rosadnavirus

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I7CPB4|I7CPB4_9VIRU Uncharacterized protein OS=Rose yellow vein virus OX=1213588 PE=4 SV=1
MM1 pKa = 7.71SIRR4 pKa = 11.84RR5 pKa = 11.84QEE7 pKa = 3.77VTKK10 pKa = 10.58AIQLATSNLTDD21 pKa = 3.2KK22 pKa = 11.0VLYY25 pKa = 10.12LDD27 pKa = 4.06QIGITEE33 pKa = 4.2PSFNEE38 pKa = 3.69QVNFLGNLSKK48 pKa = 9.94TNQYY52 pKa = 10.0VSGVILLKK60 pKa = 10.8LEE62 pKa = 3.91QLEE65 pKa = 4.22EE66 pKa = 4.06QIRR69 pKa = 11.84AQTIDD74 pKa = 3.28IQNLDD79 pKa = 3.52KK80 pKa = 11.08KK81 pKa = 10.69LSKK84 pKa = 10.74EE85 pKa = 3.9KK86 pKa = 10.71GIEE89 pKa = 4.14SSDD92 pKa = 3.85LDD94 pKa = 4.0PLLEE98 pKa = 4.3QIKK101 pKa = 9.74EE102 pKa = 4.04LNISKK107 pKa = 10.32DD108 pKa = 3.59VQQLSRR114 pKa = 11.84DD115 pKa = 3.68LEE117 pKa = 4.32SLKK120 pKa = 11.04GEE122 pKa = 4.32TSIQPQFGWMTEE134 pKa = 3.86GKK136 pKa = 10.39ADD138 pKa = 3.55LFSYY142 pKa = 10.47RR143 pKa = 11.84KK144 pKa = 9.58VKK146 pKa = 10.62PGDD149 pKa = 3.72SSSLPLSLKK158 pKa = 10.7DD159 pKa = 3.63KK160 pKa = 10.73EE161 pKa = 4.53EE162 pKa = 4.59SSSQQ166 pKa = 3.23

Molecular weight: 18.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I7E3F7|I7E3F7_9VIRU Uncharacterized protein OS=Rose yellow vein virus OX=1213588 PE=4 SV=1
MM1 pKa = 7.48FANCLNFLRR10 pKa = 11.84EE11 pKa = 4.05IKK13 pKa = 10.21QVLSLLLQLSKK24 pKa = 10.93KK25 pKa = 10.34ALFMSQLVFLTRR37 pKa = 11.84LIVDD41 pKa = 5.29LIYY44 pKa = 11.12VSNNHH49 pKa = 6.17FKK51 pKa = 10.75PPLRR55 pKa = 11.84ANPRR59 pKa = 11.84VPTEE63 pKa = 3.12IHH65 pKa = 5.53QRR67 pKa = 11.84NNSNEE72 pKa = 3.98YY73 pKa = 9.5PDD75 pKa = 5.75SDD77 pKa = 4.3IDD79 pKa = 3.3WSTISLNN86 pKa = 3.56

Molecular weight: 10.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2692

86

819

336.5

38.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.792 ± 0.372

1.077 ± 0.334

4.903 ± 0.363

8.247 ± 0.46

4.495 ± 0.248

3.752 ± 0.287

2.08 ± 0.43

7.764 ± 0.481

9.138 ± 0.73

9.77 ± 0.684

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.895 ± 0.236

5.684 ± 0.273

4.755 ± 0.5

5.312 ± 0.527

4.235 ± 0.206

8.544 ± 0.495

4.458 ± 0.33

4.643 ± 0.511

1.337 ± 0.233

3.12 ± 0.46
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski