Chaetoceros protobacilladnavirus 2 (Chaetoceros sp. DNA virus 7)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Baphyvirales; Bacilladnaviridae; Protobacilladnavirus

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|W6JIC6|CAPSD_CPBDV Capsid protein OS=Chaetoceros protobacilladnavirus 2 OX=2170141 PE=3 SV=1
MM1 pKa = 6.99NVKK4 pKa = 9.96GASDD8 pKa = 3.66KK9 pKa = 11.47AQLAMQAEE17 pKa = 4.67WEE19 pKa = 4.28EE20 pKa = 4.07VLAPEE25 pKa = 4.5GALAVEE31 pKa = 4.71EE32 pKa = 4.33ASSVLKK38 pKa = 10.77ISDD41 pKa = 3.59DD42 pKa = 3.49EE43 pKa = 4.26RR44 pKa = 11.84RR45 pKa = 11.84SYY47 pKa = 10.69AAYY50 pKa = 9.14IDD52 pKa = 4.99NIIQEE57 pKa = 4.14NEE59 pKa = 3.26IDD61 pKa = 3.76VVYY64 pKa = 10.4GHH66 pKa = 6.37SRR68 pKa = 11.84GAAIASEE75 pKa = 4.63LEE77 pKa = 3.89SDD79 pKa = 3.98VQIIGLDD86 pKa = 3.38GAMVIANDD94 pKa = 3.34QANFLNIRR102 pKa = 11.84QDD104 pKa = 3.25DD105 pKa = 4.15SEE107 pKa = 5.87GYY109 pKa = 10.86GFDD112 pKa = 3.29RR113 pKa = 11.84TIAGPYY119 pKa = 8.47EE120 pKa = 3.68NTVIVKK126 pKa = 10.05GGAFHH131 pKa = 7.27KK132 pKa = 10.57VAVPEE137 pKa = 5.08GYY139 pKa = 8.05HH140 pKa = 4.83TKK142 pKa = 10.3KK143 pKa = 10.53PKK145 pKa = 10.29ASQEE149 pKa = 3.79ALEE152 pKa = 3.94RR153 pKa = 11.84AKK155 pKa = 10.78ARR157 pKa = 11.84KK158 pKa = 9.06HH159 pKa = 4.43NRR161 pKa = 11.84ARR163 pKa = 11.84HH164 pKa = 4.71IARR167 pKa = 11.84AIDD170 pKa = 3.44RR171 pKa = 11.84LTARR175 pKa = 11.84KK176 pKa = 7.59TDD178 pKa = 3.3KK179 pKa = 10.65EE180 pKa = 4.01LEE182 pKa = 4.08EE183 pKa = 4.37IYY185 pKa = 10.04WRR187 pKa = 11.84EE188 pKa = 3.36RR189 pKa = 11.84RR190 pKa = 11.84KK191 pKa = 10.35KK192 pKa = 10.34NKK194 pKa = 10.03NEE196 pKa = 3.57FSKK199 pKa = 11.3ALIEE203 pKa = 4.94FIEE206 pKa = 4.29EE207 pKa = 3.8QLLL210 pKa = 3.73

Molecular weight: 23.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|W6JIC6|CAPSD_CPBDV Capsid protein OS=Chaetoceros protobacilladnavirus 2 OX=2170141 PE=3 SV=1
MM1 pKa = 7.61ARR3 pKa = 11.84TKK5 pKa = 10.62SKK7 pKa = 9.63PRR9 pKa = 11.84KK10 pKa = 7.43RR11 pKa = 11.84TTVRR15 pKa = 11.84KK16 pKa = 9.5ARR18 pKa = 11.84RR19 pKa = 11.84SVKK22 pKa = 10.16RR23 pKa = 11.84RR24 pKa = 11.84TTTKK28 pKa = 7.98GTKK31 pKa = 9.6RR32 pKa = 11.84KK33 pKa = 7.41TAGDD37 pKa = 3.84PVTKK41 pKa = 10.23AKK43 pKa = 10.48RR44 pKa = 11.84GVATSSPFAAHH55 pKa = 6.28HH56 pKa = 5.77AVRR59 pKa = 11.84MNPFSGATTQPKK71 pKa = 10.02IPDD74 pKa = 3.57GGFTSSLSRR83 pKa = 11.84RR84 pKa = 11.84LQNVVEE90 pKa = 4.3VTNASNEE97 pKa = 4.48GIMHH101 pKa = 7.19LVMAPTMGVPICVTHH116 pKa = 4.7TTEE119 pKa = 4.41GASTRR124 pKa = 11.84SGATLKK130 pKa = 10.58PSYY133 pKa = 10.54LGFLGQGVGLEE144 pKa = 4.31TKK146 pKa = 10.48VGGVIKK152 pKa = 10.2WPIANTDD159 pKa = 3.22TGDD162 pKa = 3.71VINAADD168 pKa = 3.7FAKK171 pKa = 9.96WRR173 pKa = 11.84VVSQGLQITLNNVDD187 pKa = 5.01DD188 pKa = 5.37EE189 pKa = 4.62NDD191 pKa = 3.14GWFEE195 pKa = 3.72AVRR198 pKa = 11.84FNWRR202 pKa = 11.84NDD204 pKa = 3.37NEE206 pKa = 4.91DD207 pKa = 3.14ICLTSLDD214 pKa = 3.91GTDD217 pKa = 3.14TGNVIGAAPNLNGLPLLTANIVEE240 pKa = 4.28MPGYY244 pKa = 10.47KK245 pKa = 9.74SGLLKK250 pKa = 10.47DD251 pKa = 3.32IKK253 pKa = 10.68DD254 pKa = 3.99YY255 pKa = 11.61QFMLHH260 pKa = 6.23PQQTRR265 pKa = 11.84HH266 pKa = 6.45DD267 pKa = 3.91PVEE270 pKa = 3.93ITKK273 pKa = 10.86SIDD276 pKa = 3.47FVGGTDD282 pKa = 4.55LNYY285 pKa = 9.07DD286 pKa = 3.93TQSKK290 pKa = 9.58KK291 pKa = 11.15ANLGDD296 pKa = 3.97SAAGTLLKK304 pKa = 10.59QGLVDD309 pKa = 5.19QNMDD313 pKa = 2.33WMYY316 pKa = 11.18IRR318 pKa = 11.84IHH320 pKa = 6.19PRR322 pKa = 11.84SNTGAAGQTGSKK334 pKa = 9.82LICNYY339 pKa = 9.62IQNLEE344 pKa = 4.22FAFSPDD350 pKa = 3.21SDD352 pKa = 4.04LATYY356 pKa = 7.5MTTNRR361 pKa = 11.84MDD363 pKa = 3.93PKK365 pKa = 10.22SAKK368 pKa = 10.38INDD371 pKa = 3.8QLNNNQDD378 pKa = 3.23AANKK382 pKa = 9.55KK383 pKa = 10.34RR384 pKa = 11.84EE385 pKa = 4.1FNN387 pKa = 3.6

Molecular weight: 42.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

1081

210

484

360.3

40.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.048 ± 1.78

1.11 ± 0.463

6.846 ± 0.252

7.216 ± 2.139

4.07 ± 0.874

6.846 ± 0.79

3.053 ± 0.737

5.365 ± 0.861

7.216 ± 0.145

5.828 ± 0.631

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.758 ± 0.514

5.92 ± 0.743

4.718 ± 0.964

4.07 ± 0.153

5.92 ± 0.387

5.643 ± 0.163

6.383 ± 1.764

5.273 ± 0.538

1.943 ± 0.546

2.775 ± 0.452
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski