Parasitella parasitica

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina; Mucoromycetes; Mucorales; Mucorineae; Mucoraceae; Parasitella

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 13357 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B7N2A6|A0A0B7N2A6_9FUNG Uncharacterized protein (Fragment) OS=Parasitella parasitica OX=35722 GN=PARPA_03018.1 scaffold 6065 PE=4 SV=1
MM1 pKa = 7.71ARR3 pKa = 11.84LTQLCLATLALLVIATSAAPCHH25 pKa = 6.36GDD27 pKa = 3.69NGLGDD32 pKa = 4.28HH33 pKa = 7.6DD34 pKa = 5.24GGDD37 pKa = 3.98HH38 pKa = 6.6EE39 pKa = 5.61LGHH42 pKa = 7.24HH43 pKa = 6.74GDD45 pKa = 4.23HH46 pKa = 7.24EE47 pKa = 4.62DD48 pKa = 4.26AEE50 pKa = 4.51DD51 pKa = 3.68WDD53 pKa = 4.77DD54 pKa = 3.74EE55 pKa = 5.36HH56 pKa = 9.23DD57 pKa = 5.05GEE59 pKa = 5.27WDD61 pKa = 4.39DD62 pKa = 5.69DD63 pKa = 4.24DD64 pKa = 7.07DD65 pKa = 5.65YY66 pKa = 12.09EE67 pKa = 5.9GGNDD71 pKa = 4.63DD72 pKa = 5.42EE73 pKa = 5.07DD74 pKa = 4.11WNDD77 pKa = 3.38GGNGIDD83 pKa = 5.36NEE85 pKa = 4.22DD86 pKa = 3.51WDD88 pKa = 4.09NGEE91 pKa = 5.12DD92 pKa = 4.53NGGCHH97 pKa = 6.85PRR99 pKa = 11.84GCSDD103 pKa = 4.38YY104 pKa = 11.65DD105 pKa = 3.61DD106 pKa = 6.21DD107 pKa = 5.53YY108 pKa = 11.87PNGNNGGNHH117 pKa = 6.47GGNNGGNHH125 pKa = 6.54GGNNGGNNGGNHH137 pKa = 6.21GNNGNNGNNGNNGGGRR153 pKa = 11.84GNNDD157 pKa = 3.63DD158 pKa = 4.79NDD160 pKa = 4.48DD161 pKa = 3.84GSLIDD166 pKa = 4.16VDD168 pKa = 4.25AGHH171 pKa = 7.32IGTGNLNFQNALQGVVNLDD190 pKa = 3.63DD191 pKa = 5.83LNANDD196 pKa = 4.03IAHH199 pKa = 7.7DD200 pKa = 3.83INALNN205 pKa = 3.75

Molecular weight: 21.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B7N1A7|A0A0B7N1A7_9FUNG HTH_Tnp_Tc3_2 domain-containing protein OS=Parasitella parasitica OX=35722 GN=PARPA_02769.1 scaffold 5272 PE=4 SV=1
AA1 pKa = 7.53QAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQALAQNQSQAHH72 pKa = 4.82MQQLQQQAVQSRR84 pKa = 11.84ASTPSQSHH92 pKa = 5.84MSTPTISHH100 pKa = 5.83STPLQQSASLPRR112 pKa = 11.84QSLALPGNGLKK123 pKa = 10.07SQQQTPTQAQAQLSAQHH140 pKa = 6.12MALLQQQQQQQAAMQSMGLPQRR162 pKa = 11.84SVQTSVPPTSQISNMLPTNVNNNNMTQTPVMSSIQQTALQQALSNGNGQLNPQASLQRR220 pKa = 11.84IQQLVATGAIPLATAQQLVSQLVNSGNLQRR250 pKa = 11.84QQAAAQQQQALQQVQQQQQQQFNQQSPVQQRR281 pKa = 11.84LQQQQQQQQQQQQQQQQQQQQQ302 pKa = 3.04

Molecular weight: 32.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

13357

0

13357

5787778

17

6128

433.3

48.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.089 ± 0.021

1.395 ± 0.009

5.839 ± 0.015

6.132 ± 0.021

3.973 ± 0.014

4.946 ± 0.019

2.557 ± 0.01

5.927 ± 0.016

6.313 ± 0.02

8.977 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.373 ± 0.008

5.053 ± 0.014

4.867 ± 0.017

4.829 ± 0.021

4.977 ± 0.015

8.474 ± 0.027

6.059 ± 0.018

5.828 ± 0.015

1.108 ± 0.007

3.255 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski