Amino acid dipepetide frequency for Sicinivirus A (SiV-A1) (Sicinivirus 1)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.684AlaAla: 7.684 ± 0.0
2.794AlaCys: 2.794 ± 0.0
5.938AlaAsp: 5.938 ± 0.0
1.397AlaGlu: 1.397 ± 0.0
5.239AlaPhe: 5.239 ± 0.0
4.191AlaGly: 4.191 ± 0.0
1.746AlaHis: 1.746 ± 0.0
4.89AlaIle: 4.89 ± 0.0
1.397AlaLys: 1.397 ± 0.0
6.636AlaLeu: 6.636 ± 0.0
1.746AlaMet: 1.746 ± 0.0
3.493AlaAsn: 3.493 ± 0.0
8.732AlaPro: 8.732 ± 0.0
5.239AlaGln: 5.239 ± 0.0
4.191AlaArg: 4.191 ± 0.0
8.034AlaSer: 8.034 ± 0.0
4.541AlaThr: 4.541 ± 0.0
5.239AlaVal: 5.239 ± 0.0
1.048AlaTrp: 1.048 ± 0.0
2.794AlaTyr: 2.794 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
2.096CysAla: 2.096 ± 0.0
0.699CysCys: 0.699 ± 0.0
1.048CysAsp: 1.048 ± 0.0
1.746CysGlu: 1.746 ± 0.0
0.699CysPhe: 0.699 ± 0.0
1.397CysGly: 1.397 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.349CysIle: 0.349 ± 0.0
0.349CysLys: 0.349 ± 0.0
3.144CysLeu: 3.144 ± 0.0
0.349CysMet: 0.349 ± 0.0
1.048CysAsn: 1.048 ± 0.0
1.746CysPro: 1.746 ± 0.0
0.349CysGln: 0.349 ± 0.0
0.699CysArg: 0.699 ± 0.0
1.048CysSer: 1.048 ± 0.0
1.048CysThr: 1.048 ± 0.0
1.397CysVal: 1.397 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.397CysTyr: 1.397 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.191AspAla: 4.191 ± 0.0
1.048AspCys: 1.048 ± 0.0
3.493AspAsp: 3.493 ± 0.0
3.493AspGlu: 3.493 ± 0.0
2.445AspPhe: 2.445 ± 0.0
4.89AspGly: 4.89 ± 0.0
1.048AspHis: 1.048 ± 0.0
1.746AspIle: 1.746 ± 0.0
1.048AspLys: 1.048 ± 0.0
4.191AspLeu: 4.191 ± 0.0
2.096AspMet: 2.096 ± 0.0
0.699AspAsn: 0.699 ± 0.0
3.493AspPro: 3.493 ± 0.0
0.349AspGln: 0.349 ± 0.0
0.699AspArg: 0.699 ± 0.0
2.445AspSer: 2.445 ± 0.0
3.144AspThr: 3.144 ± 0.0
4.89AspVal: 4.89 ± 0.0
2.096AspTrp: 2.096 ± 0.0
3.144AspTyr: 3.144 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.842GluAla: 3.842 ± 0.0
1.746GluCys: 1.746 ± 0.0
1.746GluAsp: 1.746 ± 0.0
2.794GluGlu: 2.794 ± 0.0
1.048GluPhe: 1.048 ± 0.0
2.794GluGly: 2.794 ± 0.0
0.699GluHis: 0.699 ± 0.0
2.445GluIle: 2.445 ± 0.0
1.397GluLys: 1.397 ± 0.0
3.842GluLeu: 3.842 ± 0.0
0.349GluMet: 0.349 ± 0.0
1.397GluAsn: 1.397 ± 0.0
3.842GluPro: 3.842 ± 0.0
1.048GluGln: 1.048 ± 0.0
3.144GluArg: 3.144 ± 0.0
3.144GluSer: 3.144 ± 0.0
2.445GluThr: 2.445 ± 0.0
3.144GluVal: 3.144 ± 0.0
0.349GluTrp: 0.349 ± 0.0
0.699GluTyr: 0.699 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.794PheAla: 2.794 ± 0.0
0.349PheCys: 0.349 ± 0.0
2.794PheAsp: 2.794 ± 0.0
1.397PheGlu: 1.397 ± 0.0
1.048PhePhe: 1.048 ± 0.0
2.096PheGly: 2.096 ± 0.0
1.397PheHis: 1.397 ± 0.0
1.746PheIle: 1.746 ± 0.0
2.096PheLys: 2.096 ± 0.0
3.493PheLeu: 3.493 ± 0.0
0.349PheMet: 0.349 ± 0.0
1.048PheAsn: 1.048 ± 0.0
2.445PhePro: 2.445 ± 0.0
0.699PheGln: 0.699 ± 0.0
1.746PheArg: 1.746 ± 0.0
4.541PheSer: 4.541 ± 0.0
4.191PheThr: 4.191 ± 0.0
3.493PheVal: 3.493 ± 0.0
0.349PheTrp: 0.349 ± 0.0
1.397PheTyr: 1.397 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
5.589GlyAla: 5.589 ± 0.0
1.397GlyCys: 1.397 ± 0.0
4.89GlyAsp: 4.89 ± 0.0
2.445GlyGlu: 2.445 ± 0.0
1.397GlyPhe: 1.397 ± 0.0
4.191GlyGly: 4.191 ± 0.0
1.397GlyHis: 1.397 ± 0.0
3.842GlyIle: 3.842 ± 0.0
2.445GlyLys: 2.445 ± 0.0
3.493GlyLeu: 3.493 ± 0.0
0.349GlyMet: 0.349 ± 0.0
2.794GlyAsn: 2.794 ± 0.0
6.636GlyPro: 6.636 ± 0.0
2.096GlyGln: 2.096 ± 0.0
3.842GlyArg: 3.842 ± 0.0
4.89GlySer: 4.89 ± 0.0
2.794GlyThr: 2.794 ± 0.0
3.842GlyVal: 3.842 ± 0.0
1.397GlyTrp: 1.397 ± 0.0
2.445GlyTyr: 2.445 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.794HisAla: 2.794 ± 0.0
1.397HisCys: 1.397 ± 0.0
1.048HisAsp: 1.048 ± 0.0
1.048HisGlu: 1.048 ± 0.0
1.397HisPhe: 1.397 ± 0.0
2.096HisGly: 2.096 ± 0.0
1.048HisHis: 1.048 ± 0.0
1.048HisIle: 1.048 ± 0.0
0.349HisLys: 0.349 ± 0.0
2.445HisLeu: 2.445 ± 0.0
0.349HisMet: 0.349 ± 0.0
1.397HisAsn: 1.397 ± 0.0
3.144HisPro: 3.144 ± 0.0
1.048HisGln: 1.048 ± 0.0
1.048HisArg: 1.048 ± 0.0
2.096HisSer: 2.096 ± 0.0
2.794HisThr: 2.794 ± 0.0
1.746HisVal: 1.746 ± 0.0
1.397HisTrp: 1.397 ± 0.0
0.349HisTyr: 0.349 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.541IleAla: 4.541 ± 0.0
0.699IleCys: 0.699 ± 0.0
1.746IleAsp: 1.746 ± 0.0
2.445IleGlu: 2.445 ± 0.0
2.096IlePhe: 2.096 ± 0.0
3.493IleGly: 3.493 ± 0.0
2.445IleHis: 2.445 ± 0.0
1.746IleIle: 1.746 ± 0.0
1.746IleLys: 1.746 ± 0.0
4.191IleLeu: 4.191 ± 0.0
1.048IleMet: 1.048 ± 0.0
1.397IleAsn: 1.397 ± 0.0
5.938IlePro: 5.938 ± 0.0
2.794IleGln: 2.794 ± 0.0
2.096IleArg: 2.096 ± 0.0
4.191IleSer: 4.191 ± 0.0
4.191IleThr: 4.191 ± 0.0
1.048IleVal: 1.048 ± 0.0
0.349IleTrp: 0.349 ± 0.0
2.096IleTyr: 2.096 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.445LysAla: 2.445 ± 0.0
0.0LysCys: 0.0 ± 0.0
3.144LysAsp: 3.144 ± 0.0
1.397LysGlu: 1.397 ± 0.0
0.0LysPhe: 0.0 ± 0.0
2.096LysGly: 2.096 ± 0.0
1.746LysHis: 1.746 ± 0.0
0.699LysIle: 0.699 ± 0.0
1.397LysLys: 1.397 ± 0.0
2.445LysLeu: 2.445 ± 0.0
0.0LysMet: 0.0 ± 0.0
1.048LysAsn: 1.048 ± 0.0
2.794LysPro: 2.794 ± 0.0
1.048LysGln: 1.048 ± 0.0
1.048LysArg: 1.048 ± 0.0
1.746LysSer: 1.746 ± 0.0
0.349LysThr: 0.349 ± 0.0
2.445LysVal: 2.445 ± 0.0
0.0LysTrp: 0.0 ± 0.0
1.397LysTyr: 1.397 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.986LeuAla: 6.986 ± 0.0
2.794LeuCys: 2.794 ± 0.0
4.89LeuAsp: 4.89 ± 0.0
4.541LeuGlu: 4.541 ± 0.0
2.794LeuPhe: 2.794 ± 0.0
3.493LeuGly: 3.493 ± 0.0
1.746LeuHis: 1.746 ± 0.0
5.239LeuIle: 5.239 ± 0.0
3.144LeuLys: 3.144 ± 0.0
8.034LeuLeu: 8.034 ± 0.0
1.048LeuMet: 1.048 ± 0.0
2.445LeuAsn: 2.445 ± 0.0
9.78LeuPro: 9.78 ± 0.0
2.794LeuGln: 2.794 ± 0.0
7.335LeuArg: 7.335 ± 0.0
7.684LeuSer: 7.684 ± 0.0
8.383LeuThr: 8.383 ± 0.0
3.144LeuVal: 3.144 ± 0.0
0.699LeuTrp: 0.699 ± 0.0
3.842LeuTyr: 3.842 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.445MetAla: 2.445 ± 0.0
0.349MetCys: 0.349 ± 0.0
0.349MetAsp: 0.349 ± 0.0
0.349MetGlu: 0.349 ± 0.0
0.699MetPhe: 0.699 ± 0.0
1.048MetGly: 1.048 ± 0.0
0.349MetHis: 0.349 ± 0.0
0.349MetIle: 0.349 ± 0.0
0.699MetLys: 0.699 ± 0.0
3.493MetLeu: 3.493 ± 0.0
0.0MetMet: 0.0 ± 0.0
0.699MetAsn: 0.699 ± 0.0
0.349MetPro: 0.349 ± 0.0
0.699MetGln: 0.699 ± 0.0
1.397MetArg: 1.397 ± 0.0
1.048MetSer: 1.048 ± 0.0
1.397MetThr: 1.397 ± 0.0
1.746MetVal: 1.746 ± 0.0
0.349MetTrp: 0.349 ± 0.0
0.349MetTyr: 0.349 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
4.191AsnAla: 4.191 ± 0.0
0.0AsnCys: 0.0 ± 0.0
1.048AsnAsp: 1.048 ± 0.0
0.0AsnGlu: 0.0 ± 0.0
3.144AsnPhe: 3.144 ± 0.0
2.096AsnGly: 2.096 ± 0.0
0.349AsnHis: 0.349 ± 0.0
2.096AsnIle: 2.096 ± 0.0
0.349AsnLys: 0.349 ± 0.0
3.144AsnLeu: 3.144 ± 0.0
0.0AsnMet: 0.0 ± 0.0
0.699AsnAsn: 0.699 ± 0.0
4.89AsnPro: 4.89 ± 0.0
1.746AsnGln: 1.746 ± 0.0
0.699AsnArg: 0.699 ± 0.0
2.096AsnSer: 2.096 ± 0.0
3.493AsnThr: 3.493 ± 0.0
2.794AsnVal: 2.794 ± 0.0
0.349AsnTrp: 0.349 ± 0.0
1.048AsnTyr: 1.048 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
8.732ProAla: 8.732 ± 0.0
2.794ProCys: 2.794 ± 0.0
4.89ProAsp: 4.89 ± 0.0
6.287ProGlu: 6.287 ± 0.0
3.144ProPhe: 3.144 ± 0.0
8.034ProGly: 8.034 ± 0.0
3.493ProHis: 3.493 ± 0.0
3.493ProIle: 3.493 ± 0.0
1.397ProLys: 1.397 ± 0.0
9.081ProLeu: 9.081 ± 0.0
1.746ProMet: 1.746 ± 0.0
3.493ProAsn: 3.493 ± 0.0
11.526ProPro: 11.526 ± 0.0
2.794ProGln: 2.794 ± 0.0
4.191ProArg: 4.191 ± 0.0
9.431ProSer: 9.431 ± 0.0
4.191ProThr: 4.191 ± 0.0
6.636ProVal: 6.636 ± 0.0
1.397ProTrp: 1.397 ± 0.0
2.096ProTyr: 2.096 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
4.89GlnAla: 4.89 ± 0.0
0.349GlnCys: 0.349 ± 0.0
1.397GlnAsp: 1.397 ± 0.0
1.048GlnGlu: 1.048 ± 0.0
0.699GlnPhe: 0.699 ± 0.0
2.096GlnGly: 2.096 ± 0.0
0.699GlnHis: 0.699 ± 0.0
1.746GlnIle: 1.746 ± 0.0
0.349GlnLys: 0.349 ± 0.0
3.144GlnLeu: 3.144 ± 0.0
0.349GlnMet: 0.349 ± 0.0
1.746GlnAsn: 1.746 ± 0.0
2.445GlnPro: 2.445 ± 0.0
1.746GlnGln: 1.746 ± 0.0
2.445GlnArg: 2.445 ± 0.0
4.541GlnSer: 4.541 ± 0.0
1.746GlnThr: 1.746 ± 0.0
2.096GlnVal: 2.096 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
2.445GlnTyr: 2.445 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.842ArgAla: 3.842 ± 0.0
1.048ArgCys: 1.048 ± 0.0
2.445ArgAsp: 2.445 ± 0.0
1.397ArgGlu: 1.397 ± 0.0
2.794ArgPhe: 2.794 ± 0.0
3.493ArgGly: 3.493 ± 0.0
2.794ArgHis: 2.794 ± 0.0
3.144ArgIle: 3.144 ± 0.0
1.746ArgLys: 1.746 ± 0.0
7.335ArgLeu: 7.335 ± 0.0
1.746ArgMet: 1.746 ± 0.0
2.445ArgAsn: 2.445 ± 0.0
4.191ArgPro: 4.191 ± 0.0
0.699ArgGln: 0.699 ± 0.0
3.842ArgArg: 3.842 ± 0.0
4.89ArgSer: 4.89 ± 0.0
2.445ArgThr: 2.445 ± 0.0
1.397ArgVal: 1.397 ± 0.0
1.048ArgTrp: 1.048 ± 0.0
0.349ArgTyr: 0.349 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.589SerAla: 5.589 ± 0.0
1.397SerCys: 1.397 ± 0.0
2.445SerAsp: 2.445 ± 0.0
2.445SerGlu: 2.445 ± 0.0
2.794SerPhe: 2.794 ± 0.0
7.335SerGly: 7.335 ± 0.0
2.445SerHis: 2.445 ± 0.0
5.938SerIle: 5.938 ± 0.0
3.144SerLys: 3.144 ± 0.0
9.081SerLeu: 9.081 ± 0.0
2.445SerMet: 2.445 ± 0.0
2.445SerAsn: 2.445 ± 0.0
7.684SerPro: 7.684 ± 0.0
3.842SerGln: 3.842 ± 0.0
3.493SerArg: 3.493 ± 0.0
5.938SerSer: 5.938 ± 0.0
6.287SerThr: 6.287 ± 0.0
5.938SerVal: 5.938 ± 0.0
0.699SerTrp: 0.699 ± 0.0
1.397SerTyr: 1.397 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
6.636ThrAla: 6.636 ± 0.0
0.349ThrCys: 0.349 ± 0.0
1.746ThrAsp: 1.746 ± 0.0
3.144ThrGlu: 3.144 ± 0.0
3.842ThrPhe: 3.842 ± 0.0
3.144ThrGly: 3.144 ± 0.0
2.445ThrHis: 2.445 ± 0.0
3.144ThrIle: 3.144 ± 0.0
3.144ThrLys: 3.144 ± 0.0
3.842ThrLeu: 3.842 ± 0.0
1.397ThrMet: 1.397 ± 0.0
2.096ThrAsn: 2.096 ± 0.0
8.732ThrPro: 8.732 ± 0.0
2.096ThrGln: 2.096 ± 0.0
2.445ThrArg: 2.445 ± 0.0
6.287ThrSer: 6.287 ± 0.0
3.493ThrThr: 3.493 ± 0.0
5.239ThrVal: 5.239 ± 0.0
0.699ThrTrp: 0.699 ± 0.0
2.445ThrTyr: 2.445 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.589ValAla: 5.589 ± 0.0
0.0ValCys: 0.0 ± 0.0
3.144ValAsp: 3.144 ± 0.0
3.493ValGlu: 3.493 ± 0.0
2.096ValPhe: 2.096 ± 0.0
1.746ValGly: 1.746 ± 0.0
1.397ValHis: 1.397 ± 0.0
3.493ValIle: 3.493 ± 0.0
1.048ValLys: 1.048 ± 0.0
4.541ValLeu: 4.541 ± 0.0
1.397ValMet: 1.397 ± 0.0
2.445ValAsn: 2.445 ± 0.0
6.636ValPro: 6.636 ± 0.0
2.794ValGln: 2.794 ± 0.0
5.239ValArg: 5.239 ± 0.0
4.89ValSer: 4.89 ± 0.0
5.589ValThr: 5.589 ± 0.0
2.794ValVal: 2.794 ± 0.0
0.699ValTrp: 0.699 ± 0.0
2.794ValTyr: 2.794 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.699TrpAla: 0.699 ± 0.0
1.048TrpCys: 1.048 ± 0.0
0.349TrpAsp: 0.349 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.349TrpGly: 0.349 ± 0.0
0.699TrpHis: 0.699 ± 0.0
0.349TrpIle: 0.349 ± 0.0
0.0TrpLys: 0.0 ± 0.0
2.096TrpLeu: 2.096 ± 0.0
1.048TrpMet: 1.048 ± 0.0
0.699TrpAsn: 0.699 ± 0.0
1.397TrpPro: 1.397 ± 0.0
0.349TrpGln: 0.349 ± 0.0
1.746TrpArg: 1.746 ± 0.0
1.048TrpSer: 1.048 ± 0.0
0.699TrpThr: 0.699 ± 0.0
0.699TrpVal: 0.699 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.349TrpTyr: 0.349 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.397TyrAla: 1.397 ± 0.0
0.349TyrCys: 0.349 ± 0.0
2.096TyrAsp: 2.096 ± 0.0
1.048TyrGlu: 1.048 ± 0.0
2.096TyrPhe: 2.096 ± 0.0
2.096TyrGly: 2.096 ± 0.0
2.096TyrHis: 2.096 ± 0.0
2.794TyrIle: 2.794 ± 0.0
0.0TyrLys: 0.0 ± 0.0
3.144TyrLeu: 3.144 ± 0.0
0.0TyrMet: 0.0 ± 0.0
0.699TyrAsn: 0.699 ± 0.0
2.445TyrPro: 2.445 ± 0.0
1.746TyrGln: 1.746 ± 0.0
1.746TyrArg: 1.746 ± 0.0
2.794TyrSer: 2.794 ± 0.0
3.493TyrThr: 3.493 ± 0.0
2.096TyrVal: 2.096 ± 0.0
0.699TyrTrp: 0.699 ± 0.0
2.096TyrTyr: 2.096 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2864 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski