Capybara microvirus Cap3_SP_613

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W569|A0A4P8W569_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_613 OX=2585483 PE=3 SV=1
MM1 pKa = 7.58LKK3 pKa = 10.79LNLRR7 pKa = 11.84EE8 pKa = 3.88NFIYY12 pKa = 10.58EE13 pKa = 4.28SIDD16 pKa = 3.39YY17 pKa = 10.45SKK19 pKa = 11.51GSIVDD24 pKa = 3.68TYY26 pKa = 11.55KK27 pKa = 11.13VILPYY32 pKa = 10.68QKK34 pKa = 10.43DD35 pKa = 3.72DD36 pKa = 3.85KK37 pKa = 11.62GVFLNDD43 pKa = 3.3SDD45 pKa = 3.9TPIYY49 pKa = 10.42VKK51 pKa = 10.43SGKK54 pKa = 10.07KK55 pKa = 10.16NLDD58 pKa = 3.24EE59 pKa = 4.93YY60 pKa = 11.13INSFKK65 pKa = 10.93DD66 pKa = 2.82EE67 pKa = 4.11CDD69 pKa = 2.83IYY71 pKa = 11.33NILSKK76 pKa = 10.97FEE78 pKa = 4.13STGDD82 pKa = 3.56VSSLNLGRR90 pKa = 11.84GVYY93 pKa = 10.65ADD95 pKa = 3.35ISKK98 pKa = 10.57IPDD101 pKa = 3.97NIHH104 pKa = 7.23DD105 pKa = 4.55FNNALNQGAEE115 pKa = 4.13ILNTLDD121 pKa = 3.02SDD123 pKa = 3.72LRR125 pKa = 11.84KK126 pKa = 10.07AILEE130 pKa = 3.9NDD132 pKa = 2.79IQAINKK138 pKa = 6.94ATNNILNGSNKK149 pKa = 9.53EE150 pKa = 4.02VLQDD154 pKa = 3.55EE155 pKa = 4.97SIKK158 pKa = 10.65EE159 pKa = 3.91AA160 pKa = 3.86

Molecular weight: 18.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5S5|A0A4P8W5S5_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_613 OX=2585483 PE=4 SV=1
MM1 pKa = 7.31TCLNLSYY8 pKa = 10.69VPCIKK13 pKa = 10.63YY14 pKa = 10.58KK15 pKa = 10.99NSDD18 pKa = 3.33KK19 pKa = 11.32KK20 pKa = 11.47KK21 pKa = 8.8MLFKK25 pKa = 10.87KK26 pKa = 10.42KK27 pKa = 10.15ILVKK31 pKa = 10.72NKK33 pKa = 10.08SDD35 pKa = 4.44LDD37 pKa = 3.96LKK39 pKa = 10.46IDD41 pKa = 3.97KK42 pKa = 9.54EE43 pKa = 4.41NCFLEE48 pKa = 4.77LKK50 pKa = 10.18EE51 pKa = 4.27SSNLFDD57 pKa = 3.83SVEE60 pKa = 4.01FLQVPCGICKK70 pKa = 10.31EE71 pKa = 4.15CLKK74 pKa = 11.04KK75 pKa = 10.36NARR78 pKa = 11.84DD79 pKa = 3.12WAFRR83 pKa = 11.84CVKK86 pKa = 9.93EE87 pKa = 3.78ASQYY91 pKa = 10.2KK92 pKa = 8.09EE93 pKa = 3.83NYY95 pKa = 8.73MITLTYY101 pKa = 11.18DD102 pKa = 3.33NDD104 pKa = 3.61NLPFNGSLVKK114 pKa = 10.92DD115 pKa = 4.42EE116 pKa = 4.06ISKK119 pKa = 10.5FNKK122 pKa = 9.61KK123 pKa = 10.03LKK125 pKa = 9.77TYY127 pKa = 10.69LSRR130 pKa = 11.84LNLPSDD136 pKa = 3.6FRR138 pKa = 11.84FFGCGEE144 pKa = 4.01YY145 pKa = 10.69GSQFGRR151 pKa = 11.84PHH153 pKa = 4.51YY154 pKa = 10.34HH155 pKa = 6.47IIYY158 pKa = 10.56FNLQLSKK165 pKa = 10.9LSEE168 pKa = 4.25LLGLRR173 pKa = 11.84YY174 pKa = 9.75YY175 pKa = 10.88GKK177 pKa = 10.04SSKK180 pKa = 10.49GFPIYY185 pKa = 10.35SCKK188 pKa = 10.4FLDD191 pKa = 4.06DD192 pKa = 3.52TWSKK196 pKa = 11.38GIVKK200 pKa = 10.07VSEE203 pKa = 4.16CDD205 pKa = 3.03IGSCAYY211 pKa = 9.3VAHH214 pKa = 6.19YY215 pKa = 10.34VDD217 pKa = 4.73KK218 pKa = 10.87KK219 pKa = 10.49KK220 pKa = 10.98CFTKK224 pKa = 9.98GQKK227 pKa = 9.68EE228 pKa = 3.74FFYY231 pKa = 10.97NNTGLVPDD239 pKa = 4.36FCVMSRR245 pKa = 11.84NPGIGSCFIEE255 pKa = 5.06DD256 pKa = 3.32VDD258 pKa = 4.49NNFLKK263 pKa = 11.04GFFNAYY269 pKa = 10.72LNGQCYY275 pKa = 10.14AIPKK279 pKa = 9.75FYY281 pKa = 10.38INKK284 pKa = 9.73LKK286 pKa = 10.72DD287 pKa = 3.59YY288 pKa = 10.58GLTSYY293 pKa = 10.99DD294 pKa = 3.07IYY296 pKa = 11.33KK297 pKa = 10.99DD298 pKa = 3.45NLLSNRR304 pKa = 11.84FNIDD308 pKa = 3.05SYY310 pKa = 11.69FLDD313 pKa = 3.56IEE315 pKa = 4.57KK316 pKa = 10.78GFSLNYY322 pKa = 9.96NLSNNKK328 pKa = 8.62GRR330 pKa = 11.84CFF332 pKa = 3.45

Molecular weight: 38.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1394

70

571

232.3

26.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.524 ± 1.622

1.865 ± 0.803

6.456 ± 0.942

4.304 ± 0.32

6.6 ± 0.923

5.452 ± 0.833

1.22 ± 0.44

6.6 ± 1.071

6.887 ± 1.848

9.469 ± 0.381

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.578 ± 0.321

9.684 ± 1.018

3.156 ± 0.973

3.156 ± 0.689

2.941 ± 0.393

9.828 ± 0.951

4.161 ± 0.686

4.878 ± 0.395

0.717 ± 0.257

5.524 ± 0.548
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski