Capybara microvirus Cap1_SP_166

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W492|A0A4P8W492_9VIRU Replication initiator protein OS=Capybara microvirus Cap1_SP_166 OX=2585401 PE=4 SV=1
MM1 pKa = 7.45VKK3 pKa = 9.25MRR5 pKa = 11.84SAVDD9 pKa = 3.87FPTNAGSAFKK19 pKa = 10.31IKK21 pKa = 9.13YY22 pKa = 6.71TPHH25 pKa = 6.79VNEE28 pKa = 5.74DD29 pKa = 3.3GTIDD33 pKa = 3.57LVEE36 pKa = 4.17SEE38 pKa = 5.11KK39 pKa = 10.98INLQAEE45 pKa = 4.42IDD47 pKa = 3.89SHH49 pKa = 8.26FDD51 pKa = 3.38EE52 pKa = 6.02VDD54 pKa = 3.38MNSVMQRR61 pKa = 11.84FGLGDD66 pKa = 3.77TSAFSYY72 pKa = 10.94NPLYY76 pKa = 11.0GDD78 pKa = 3.25TTVYY82 pKa = 10.15PKK84 pKa = 10.25TYY86 pKa = 11.13AEE88 pKa = 4.0MLQLQMDD95 pKa = 4.03VDD97 pKa = 4.66RR98 pKa = 11.84YY99 pKa = 10.55FMQLPTSIKK108 pKa = 9.85EE109 pKa = 3.85AYY111 pKa = 9.86HH112 pKa = 5.45YY113 pKa = 10.56DD114 pKa = 3.49KK115 pKa = 11.45NQFFADD121 pKa = 3.17IGSEE125 pKa = 3.63RR126 pKa = 11.84WNNLMNPAPASPEE139 pKa = 4.01SPPEE143 pKa = 4.09VITNEE148 pKa = 4.1SS149 pKa = 3.07

Molecular weight: 16.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W815|A0A4P8W815_9VIRU Nonstructural protein OS=Capybara microvirus Cap1_SP_166 OX=2585401 PE=4 SV=1
MM1 pKa = 7.8IEE3 pKa = 4.01RR4 pKa = 11.84KK5 pKa = 10.17NEE7 pKa = 3.69VFLLDD12 pKa = 3.02ICSYY16 pKa = 9.71KK17 pKa = 10.54VYY19 pKa = 10.53YY20 pKa = 10.69SFVATIFILRR30 pKa = 11.84CFMLVKK36 pKa = 10.35VIITCARR43 pKa = 11.84CGHH46 pKa = 6.48RR47 pKa = 11.84SNRR50 pKa = 11.84KK51 pKa = 8.65IRR53 pKa = 11.84LGDD56 pKa = 3.53YY57 pKa = 11.0LMVRR61 pKa = 11.84HH62 pKa = 6.79DD63 pKa = 4.15RR64 pKa = 11.84QCSKK68 pKa = 10.82CLSTDD73 pKa = 3.44FDD75 pKa = 3.8IFIEE79 pKa = 4.32SFMEE83 pKa = 4.12VV84 pKa = 2.86

Molecular weight: 10.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1487

83

569

247.8

28.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.994 ± 1.833

1.614 ± 0.722

7.128 ± 0.495

4.237 ± 0.434

5.514 ± 0.386

5.918 ± 0.581

3.295 ± 0.688

5.178 ± 0.824

4.506 ± 1.041

7.734 ± 0.85

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.757 ± 0.532

4.707 ± 0.802

5.38 ± 0.665

3.766 ± 0.312

4.976 ± 0.582

8.675 ± 1.618

5.044 ± 0.448

5.851 ± 0.522

1.21 ± 0.208

5.514 ± 0.356
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski