Capybara microvirus Cap3_SP_383

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5R6|A0A4P8W5R6_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_383 OX=2585439 PE=4 SV=1
MM1 pKa = 7.59KK2 pKa = 10.56FNGFNGTDD10 pKa = 3.82IIQVPTPKK18 pKa = 10.13NPPMMLLQPNEE29 pKa = 4.14FGEE32 pKa = 4.38MEE34 pKa = 4.66LVAFDD39 pKa = 3.82DD40 pKa = 4.3TADD43 pKa = 3.55LGYY46 pKa = 11.12ASDD49 pKa = 4.07YY50 pKa = 11.28DD51 pKa = 3.58ITTLLEE57 pKa = 3.99NGIDD61 pKa = 3.56PRR63 pKa = 11.84FVGNTKK69 pKa = 8.97PTGSMLDD76 pKa = 3.26AYY78 pKa = 10.84SGLEE82 pKa = 3.83AFQPATNINEE92 pKa = 4.25TNEE95 pKa = 3.86

Molecular weight: 10.42 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5Z5|A0A4P8W5Z5_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_383 OX=2585439 PE=3 SV=1
MM1 pKa = 8.21DD2 pKa = 5.38IFPKK6 pKa = 10.27SDD8 pKa = 2.56NHH10 pKa = 7.58ALIKK14 pKa = 10.41KK15 pKa = 9.65GYY17 pKa = 7.27TPNRR21 pKa = 11.84YY22 pKa = 9.7AMQIMNKK29 pKa = 7.25THH31 pKa = 6.27YY32 pKa = 9.43LHH34 pKa = 7.18PDD36 pKa = 2.33MRR38 pKa = 11.84YY39 pKa = 9.1RR40 pKa = 11.84YY41 pKa = 9.76NVINPYY47 pKa = 9.38SFCRR51 pKa = 11.84MFSQQQSYY59 pKa = 9.7YY60 pKa = 9.89IRR62 pKa = 11.84AYY64 pKa = 8.6YY65 pKa = 8.89QWLVTNEE72 pKa = 4.03QLGKK76 pKa = 9.28TIFLTFNYY84 pKa = 10.03NNNALPHH91 pKa = 6.08NYY93 pKa = 10.34GYY95 pKa = 7.84VTCDD99 pKa = 2.86NSHH102 pKa = 5.09IHH104 pKa = 6.52ALFRR108 pKa = 11.84NSYY111 pKa = 8.02LHH113 pKa = 7.05KK114 pKa = 10.37KK115 pKa = 9.16FKK117 pKa = 10.3DD118 pKa = 3.53YY119 pKa = 10.49RR120 pKa = 11.84IHH122 pKa = 7.36YY123 pKa = 8.34IICTEE128 pKa = 3.98FGEE131 pKa = 4.84GAGIRR136 pKa = 11.84KK137 pKa = 9.74KK138 pKa = 11.05GEE140 pKa = 3.8NPHH143 pKa = 5.06YY144 pKa = 10.28HH145 pKa = 6.11ALIYY149 pKa = 8.67LTHH152 pKa = 7.17RR153 pKa = 11.84NGEE156 pKa = 4.36CVTNHH161 pKa = 5.54VCRR164 pKa = 11.84QFLAEE169 pKa = 5.59CRR171 pKa = 11.84RR172 pKa = 11.84FWQGNPNPASKK183 pKa = 9.88TNDD186 pKa = 2.74PRR188 pKa = 11.84NFIFGKK194 pKa = 10.4VEE196 pKa = 3.81VAKK199 pKa = 11.04GKK201 pKa = 10.63GLFVDD206 pKa = 4.9SFHH209 pKa = 8.24SMQYY213 pKa = 8.88VSKK216 pKa = 9.55YY217 pKa = 8.01TIKK220 pKa = 11.04DD221 pKa = 2.82ADD223 pKa = 3.54TRR225 pKa = 11.84SRR227 pKa = 11.84MKK229 pKa = 10.48KK230 pKa = 9.75IEE232 pKa = 3.91DD233 pKa = 4.12AIYY236 pKa = 10.28NEE238 pKa = 3.24IRR240 pKa = 11.84TTVFRR245 pKa = 11.84DD246 pKa = 3.23EE247 pKa = 4.76SVNHH251 pKa = 5.65TLRR254 pKa = 11.84DD255 pKa = 3.56VLEE258 pKa = 3.99FHH260 pKa = 7.03PFVDD264 pKa = 4.75GVNDD268 pKa = 3.54EE269 pKa = 4.29QFNLSLPAHH278 pKa = 5.39YY279 pKa = 9.94FGYY282 pKa = 10.67EE283 pKa = 3.8LLHH286 pKa = 6.37YY287 pKa = 9.12YY288 pKa = 10.27QGVDD292 pKa = 2.74TGVRR296 pKa = 11.84GEE298 pKa = 4.18FKK300 pKa = 10.79SYY302 pKa = 9.3LTLLEE307 pKa = 4.27EE308 pKa = 4.2QVKK311 pKa = 10.03QLFEE315 pKa = 4.04EE316 pKa = 4.51RR317 pKa = 11.84LQEE320 pKa = 3.84EE321 pKa = 4.82KK322 pKa = 10.81KK323 pKa = 10.8RR324 pKa = 11.84IFPKK328 pKa = 10.44VFMSKK333 pKa = 10.36GFGSHH338 pKa = 6.16ALEE341 pKa = 5.82HH342 pKa = 6.18ITPDD346 pKa = 3.36YY347 pKa = 10.02KK348 pKa = 10.81IPISTPKK355 pKa = 10.32GIKK358 pKa = 9.45NVPLPMYY365 pKa = 10.29LYY367 pKa = 10.53RR368 pKa = 11.84KK369 pKa = 9.83LFYY372 pKa = 10.82DD373 pKa = 3.53VVKK376 pKa = 8.52TQEE379 pKa = 4.32GQVHH383 pKa = 4.74YY384 pKa = 9.93HH385 pKa = 5.26LNEE388 pKa = 4.05RR389 pKa = 11.84GVQYY393 pKa = 10.78KK394 pKa = 9.69IDD396 pKa = 3.81KK397 pKa = 9.94FDD399 pKa = 3.8NDD401 pKa = 3.96IYY403 pKa = 11.35NLRR406 pKa = 11.84QDD408 pKa = 3.4IYY410 pKa = 11.68AFVQNYY416 pKa = 10.0DD417 pKa = 4.3DD418 pKa = 4.41LRR420 pKa = 11.84EE421 pKa = 3.94MCDD424 pKa = 2.93IYY426 pKa = 11.21NKK428 pKa = 10.37NMYY431 pKa = 10.05DD432 pKa = 3.18SRR434 pKa = 11.84FINIYY439 pKa = 9.52HH440 pKa = 7.17AYY442 pKa = 10.02AVYY445 pKa = 10.15KK446 pKa = 9.86YY447 pKa = 9.53IYY449 pKa = 8.19EE450 pKa = 3.85GRR452 pKa = 11.84MFSLINPPQLDD463 pKa = 3.85FYY465 pKa = 11.2EE466 pKa = 4.33DD467 pKa = 3.69FKK469 pKa = 11.55RR470 pKa = 11.84FVLPHH475 pKa = 7.35DD476 pKa = 5.48DD477 pKa = 3.24EE478 pKa = 6.2DD479 pKa = 5.91LYY481 pKa = 12.05VNTLDD486 pKa = 4.75VDD488 pKa = 3.78EE489 pKa = 5.53AKK491 pKa = 10.75QNLIRR496 pKa = 11.84RR497 pKa = 11.84MRR499 pKa = 11.84LCDD502 pKa = 3.52YY503 pKa = 10.49AYY505 pKa = 10.57HH506 pKa = 7.21PDD508 pKa = 3.32FRR510 pKa = 11.84HH511 pKa = 5.08YY512 pKa = 10.65RR513 pKa = 11.84SLFEE517 pKa = 4.52TISDD521 pKa = 4.59RR522 pKa = 11.84IDD524 pKa = 3.4AYY526 pKa = 11.49NFDD529 pKa = 4.25KK530 pKa = 11.05DD531 pKa = 3.6AEE533 pKa = 4.25RR534 pKa = 11.84MKK536 pKa = 10.95SYY538 pKa = 10.74IEE540 pKa = 4.07RR541 pKa = 11.84KK542 pKa = 10.3NITTKK547 pKa = 10.44HH548 pKa = 5.84KK549 pKa = 9.6KK550 pKa = 7.56TLL552 pKa = 3.53

Molecular weight: 66.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1629

95

602

407.3

46.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.262 ± 1.376

0.798 ± 0.276

7.612 ± 0.626

4.911 ± 1.162

5.279 ± 0.86

5.893 ± 0.795

2.21 ± 1.107

5.402 ± 0.493

6.016 ± 0.687

8.165 ± 0.619

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.762 ± 0.407

7.428 ± 1.315

3.376 ± 1.055

4.604 ± 1.054

5.034 ± 0.81

5.955 ± 1.114

6.446 ± 0.996

4.85 ± 0.587

0.859 ± 0.292

6.139 ± 1.493
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski