Pseudopropionibacterium propionicum (strain F0230a) (Propionibacterium propionicum)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Arachnia; Arachnia propionica

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2931 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I6X1H9|I6X1H9_PSEPQ WYL domain-containing protein OS=Pseudopropionibacterium propionicum (strain F0230a) OX=767029 GN=HMPREF9154_2000 PE=4 SV=1
MM1 pKa = 7.57TYY3 pKa = 10.0IIALPCVDD11 pKa = 3.84VKK13 pKa = 11.27DD14 pKa = 3.97RR15 pKa = 11.84ACVEE19 pKa = 4.23EE20 pKa = 5.05CPVDD24 pKa = 4.7CIYY27 pKa = 11.01EE28 pKa = 4.32GNRR31 pKa = 11.84MLYY34 pKa = 9.14IHH36 pKa = 7.22PEE38 pKa = 3.86EE39 pKa = 4.98CVDD42 pKa = 4.78CGACEE47 pKa = 3.85PVCPVEE53 pKa = 4.4AIYY56 pKa = 11.22YY57 pKa = 10.23EE58 pKa = 4.89DD59 pKa = 5.66DD60 pKa = 3.77LPEE63 pKa = 4.39DD64 pKa = 3.37QEE66 pKa = 4.47EE67 pKa = 4.27YY68 pKa = 11.44LDD70 pKa = 3.72INAQFFEE77 pKa = 4.88DD78 pKa = 3.92LGSPGGAARR87 pKa = 11.84LGPVDD92 pKa = 4.07HH93 pKa = 7.42DD94 pKa = 4.08HH95 pKa = 6.77PTVEE99 pKa = 3.97QLPPQGEE106 pKa = 4.11

Molecular weight: 11.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I6WTL8|I6WTL8_PSEPQ FeS_assembly_P domain-containing protein OS=Pseudopropionibacterium propionicum (strain F0230a) OX=767029 GN=HMPREF9154_1086 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SRR15 pKa = 11.84THH17 pKa = 6.17GFRR20 pKa = 11.84SRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILSARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.98GRR40 pKa = 11.84TEE42 pKa = 3.99LSAA45 pKa = 4.86

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2931

0

2931

942163

37

2730

321.4

34.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.728 ± 0.057

0.837 ± 0.014

5.658 ± 0.035

6.034 ± 0.04

3.111 ± 0.027

8.948 ± 0.039

2.117 ± 0.02

4.491 ± 0.032

2.604 ± 0.036

10.607 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.137 ± 0.019

2.361 ± 0.022

5.453 ± 0.027

2.972 ± 0.026

7.458 ± 0.048

5.613 ± 0.035

5.959 ± 0.037

8.459 ± 0.042

1.564 ± 0.018

1.888 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski