Capybara microvirus Cap1_SP_108

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.08

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W4E9|A0A4P8W4E9_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_108 OX=2584806 PE=4 SV=1
MM1 pKa = 7.66NIYY4 pKa = 10.35SIYY7 pKa = 11.29DD8 pKa = 3.2MVARR12 pKa = 11.84EE13 pKa = 3.97FSSPFLAKK21 pKa = 10.22NDD23 pKa = 3.58GVAMRR28 pKa = 11.84MFGNTCRR35 pKa = 11.84SEE37 pKa = 5.12RR38 pKa = 11.84IVNPNEE44 pKa = 3.69LEE46 pKa = 4.17LYY48 pKa = 10.62CIGKK52 pKa = 9.32FLGEE56 pKa = 4.2NLDD59 pKa = 4.19GCIEE63 pKa = 4.04PCKK66 pKa = 10.39PMIIRR71 pKa = 11.84VSEE74 pKa = 4.09SDD76 pKa = 3.33VV77 pKa = 3.24

Molecular weight: 8.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W3Y6|A0A4P8W3Y6_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_108 OX=2584806 PE=3 SV=1
MM1 pKa = 8.01PCGQCVNCRR10 pKa = 11.84KK11 pKa = 10.22RR12 pKa = 11.84IRR14 pKa = 11.84SQWTGRR20 pKa = 11.84MMMEE24 pKa = 4.18NLTHH28 pKa = 6.72KK29 pKa = 10.62ASVFITLSYY38 pKa = 11.4DD39 pKa = 3.64DD40 pKa = 3.74VHH42 pKa = 8.58LPIIKK47 pKa = 9.84INEE50 pKa = 4.05RR51 pKa = 11.84SFTSYY56 pKa = 11.09DD57 pKa = 3.29SEE59 pKa = 4.06LTYY62 pKa = 10.55RR63 pKa = 11.84DD64 pKa = 4.16CCCLDD69 pKa = 3.27AHH71 pKa = 6.82NILHH75 pKa = 6.75PVRR78 pKa = 11.84LPIFSSTDD86 pKa = 3.02TSDD89 pKa = 5.22GIISDD94 pKa = 4.64FASCRR99 pKa = 11.84PNTFLTDD106 pKa = 3.59YY107 pKa = 11.04SNSPCVDD114 pKa = 5.04EE115 pKa = 5.42IPVLAPLQPRR125 pKa = 11.84DD126 pKa = 3.4TQLFLKK132 pKa = 10.36RR133 pKa = 11.84LRR135 pKa = 11.84INLKK139 pKa = 10.03RR140 pKa = 11.84QFGLSDD146 pKa = 3.16KK147 pKa = 10.79LRR149 pKa = 11.84YY150 pKa = 8.59FLCGEE155 pKa = 4.09YY156 pKa = 10.76GEE158 pKa = 4.6EE159 pKa = 3.75RR160 pKa = 11.84GRR162 pKa = 11.84PHH164 pKa = 7.17YY165 pKa = 10.94HH166 pKa = 6.41MILFGLDD173 pKa = 3.49VSPSSYY179 pKa = 10.47RR180 pKa = 11.84CRR182 pKa = 11.84DD183 pKa = 3.27SNSYY187 pKa = 10.32SKK189 pKa = 10.91AYY191 pKa = 10.52ALDD194 pKa = 3.57SVFRR198 pKa = 11.84CIQDD202 pKa = 2.65SWSLGRR208 pKa = 11.84IEE210 pKa = 4.98CEE212 pKa = 3.55PVTEE216 pKa = 4.39SNLRR220 pKa = 11.84YY221 pKa = 8.13VAKK224 pKa = 9.28YY225 pKa = 4.67TTKK228 pKa = 10.55TSMDD232 pKa = 3.81SAPSIEE238 pKa = 3.6WDD240 pKa = 3.67YY241 pKa = 11.55YY242 pKa = 10.32IRR244 pKa = 11.84QCLNYY249 pKa = 9.94LKK251 pKa = 10.3HH252 pKa = 6.03NCPMKK257 pKa = 10.62CDD259 pKa = 3.73SFCFDD264 pKa = 2.86SAKK267 pKa = 10.48RR268 pKa = 11.84FLRR271 pKa = 11.84SLRR274 pKa = 11.84DD275 pKa = 3.36FDD277 pKa = 4.15IYY279 pKa = 10.62PYY281 pKa = 9.8GQKK284 pKa = 10.12PFHH287 pKa = 6.27RR288 pKa = 11.84QSLGLGYY295 pKa = 10.72DD296 pKa = 3.73FFYY299 pKa = 11.45KK300 pKa = 10.74NIDD303 pKa = 3.71SFAHH307 pKa = 6.02KK308 pKa = 9.95PYY310 pKa = 9.25FTSASSKK317 pKa = 9.93IRR319 pKa = 11.84YY320 pKa = 7.88SFPKK324 pKa = 10.19CFYY327 pKa = 10.73DD328 pKa = 3.49RR329 pKa = 11.84YY330 pKa = 10.71KK331 pKa = 10.16RR332 pKa = 11.84TTFRR336 pKa = 11.84LYY338 pKa = 10.8QNSLLQKK345 pKa = 10.08YY346 pKa = 9.78DD347 pKa = 3.33FEE349 pKa = 5.98SYY351 pKa = 7.82VHH353 pKa = 6.81CCNNMWSSLYY363 pKa = 10.0EE364 pKa = 4.31SKK366 pKa = 10.92GLNYY370 pKa = 10.34RR371 pKa = 11.84PIFPSAKK378 pKa = 9.92IKK380 pKa = 10.87DD381 pKa = 4.0LFLKK385 pKa = 10.51SRR387 pKa = 11.84IYY389 pKa = 11.02GSFSNDD395 pKa = 3.11YY396 pKa = 9.56FPSFRR401 pKa = 11.84SPVPSYY407 pKa = 10.96KK408 pKa = 10.08KK409 pKa = 9.65WFEE412 pKa = 4.28SYY414 pKa = 10.56SKK416 pKa = 10.91HH417 pKa = 5.71NLWHH421 pKa = 6.44KK422 pKa = 10.25MPVLAHH428 pKa = 5.99SSVFVMFKK436 pKa = 10.51PPVSPPSYY444 pKa = 11.35NEE446 pKa = 3.97FCSLTYY452 pKa = 10.71KK453 pKa = 10.11HH454 pKa = 6.6LKK456 pKa = 9.15RR457 pKa = 4.93

Molecular weight: 53.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1669

77

581

278.2

31.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.752 ± 1.077

2.037 ± 0.865

6.291 ± 0.314

6.471 ± 1.102

6.111 ± 0.691

6.052 ± 1.202

2.397 ± 0.273

5.213 ± 0.456

5.632 ± 1.149

7.549 ± 0.743

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.636 ± 0.445

6.111 ± 0.66

4.254 ± 1.026

2.217 ± 0.367

5.872 ± 0.566

9.706 ± 1.393

3.954 ± 0.93

5.992 ± 0.997

1.138 ± 0.222

4.614 ± 0.958
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski