Odonata associated gemycircularvirus-1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus odona1; Odonata associated gemycircularvirus 1

Average proteome isoelectric point is 7.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B4UHX2|A0A0B4UHX2_9VIRU Replication-associated protein OS=Odonata associated gemycircularvirus-1 OX=1592107 PE=3 SV=1
MM1 pKa = 8.06PSFCTNARR9 pKa = 11.84HH10 pKa = 6.38FLITYY15 pKa = 7.25AQCGDD20 pKa = 3.45LSEE23 pKa = 4.37WNVLDD28 pKa = 4.16KK29 pKa = 11.03FSSLGAEE36 pKa = 4.22CIIARR41 pKa = 11.84EE42 pKa = 3.95YY43 pKa = 10.86HH44 pKa = 6.71ADD46 pKa = 3.65LGLHH50 pKa = 5.8LHH52 pKa = 5.84VFVDD56 pKa = 4.55FGRR59 pKa = 11.84KK60 pKa = 8.01FRR62 pKa = 11.84SRR64 pKa = 11.84KK65 pKa = 7.67TDD67 pKa = 2.7IFDD70 pKa = 3.24VDD72 pKa = 3.54GRR74 pKa = 11.84HH75 pKa = 6.05PNIKK79 pKa = 9.98RR80 pKa = 11.84SWGTPEE86 pKa = 4.27KK87 pKa = 10.76GYY89 pKa = 10.97DD90 pKa = 3.43YY91 pKa = 10.61AIKK94 pKa = 10.61DD95 pKa = 3.82GEE97 pKa = 4.57VVAGGLEE104 pKa = 4.2RR105 pKa = 11.84PDD107 pKa = 3.76GVHH110 pKa = 7.12GSGKK114 pKa = 8.36TFDD117 pKa = 4.05LWSQVAGAEE126 pKa = 4.16DD127 pKa = 3.75RR128 pKa = 11.84GEE130 pKa = 3.89FWRR133 pKa = 11.84LVEE136 pKa = 4.16EE137 pKa = 4.93LDD139 pKa = 4.72PKK141 pKa = 10.92ALCCSFTQLSKK152 pKa = 10.32FADD155 pKa = 2.99WRR157 pKa = 11.84FAEE160 pKa = 4.52VVADD164 pKa = 3.79YY165 pKa = 9.21EE166 pKa = 4.75SPGGIGFVPGDD177 pKa = 3.31VDD179 pKa = 5.71GRR181 pKa = 11.84DD182 pKa = 3.3SWVEE186 pKa = 3.83SAGLGLGEE194 pKa = 4.86PPVGMLLTPTLEE206 pKa = 4.51GGNGSGQGPYY216 pKa = 9.58PPPSLVVGASGVWYY230 pKa = 10.46ADD232 pKa = 3.22VFLVDD237 pKa = 4.41LVLGVHH243 pKa = 6.78EE244 pKa = 4.33STPRR248 pKa = 11.84QVCYY252 pKa = 10.51FDD254 pKa = 5.93DD255 pKa = 3.42IRR257 pKa = 11.84GGIKK261 pKa = 9.97FFPAFKK267 pKa = 9.81EE268 pKa = 4.05WLGGQQTVSVKK279 pKa = 10.36RR280 pKa = 11.84LYY282 pKa = 10.48RR283 pKa = 11.84DD284 pKa = 3.36PKK286 pKa = 9.31LVRR289 pKa = 11.84WGKK292 pKa = 8.77PSIWISNDD300 pKa = 3.18DD301 pKa = 4.01PRR303 pKa = 11.84HH304 pKa = 5.68SMEE307 pKa = 4.88PSDD310 pKa = 4.3ISWMEE315 pKa = 3.47ANARR319 pKa = 11.84FIEE322 pKa = 4.16VRR324 pKa = 11.84EE325 pKa = 4.37AIYY328 pKa = 9.36FSCQQ332 pKa = 2.77

Molecular weight: 36.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B4UHX2|A0A0B4UHX2_9VIRU Replication-associated protein OS=Odonata associated gemycircularvirus-1 OX=1592107 PE=3 SV=1
MM1 pKa = 7.98GYY3 pKa = 10.2RR4 pKa = 11.84GGPTKK9 pKa = 10.48RR10 pKa = 11.84ALAAYY15 pKa = 9.03KK16 pKa = 10.17RR17 pKa = 11.84SQSSKK22 pKa = 9.78RR23 pKa = 11.84RR24 pKa = 11.84YY25 pKa = 8.66SSKK28 pKa = 10.51GKK30 pKa = 6.44TRR32 pKa = 11.84RR33 pKa = 11.84YY34 pKa = 9.06RR35 pKa = 11.84KK36 pKa = 7.99KK37 pKa = 8.24TKK39 pKa = 9.72RR40 pKa = 11.84SYY42 pKa = 10.53RR43 pKa = 11.84RR44 pKa = 11.84PAMTRR49 pKa = 11.84KK50 pKa = 9.83SLLNVTSRR58 pKa = 11.84KK59 pKa = 9.78KK60 pKa = 9.82QDD62 pKa = 3.1NMLSFSNTNGSGASQALAAGSLFVNGSTGYY92 pKa = 11.26AMSLFCPTARR102 pKa = 11.84SLVTAGATNTIVDD115 pKa = 3.88TADD118 pKa = 3.55RR119 pKa = 11.84TSTTCYY125 pKa = 9.72LRR127 pKa = 11.84GYY129 pKa = 10.39RR130 pKa = 11.84EE131 pKa = 4.32DD132 pKa = 5.31LRR134 pKa = 11.84IQTSSPLPWLWRR146 pKa = 11.84RR147 pKa = 11.84ICFTSKK153 pKa = 10.69GATFQQAFNDD163 pKa = 4.01SSPTAPIQPYY173 pKa = 9.49SDD175 pKa = 3.37TSIGMARR182 pKa = 11.84KK183 pKa = 8.61WFNLQVNNSPNTVANYY199 pKa = 8.27NQIMFRR205 pKa = 11.84GNFGADD211 pKa = 2.86WNDD214 pKa = 3.24VITAKK219 pKa = 10.47VDD221 pKa = 3.28TTRR224 pKa = 11.84ITVKK228 pKa = 9.88SDD230 pKa = 2.25RR231 pKa = 11.84VTRR234 pKa = 11.84ITTGNNSGHH243 pKa = 5.48FSEE246 pKa = 5.23RR247 pKa = 11.84KK248 pKa = 8.77LWYY251 pKa = 9.46PMNRR255 pKa = 11.84NLVYY259 pKa = 10.9DD260 pKa = 4.26DD261 pKa = 5.25DD262 pKa = 4.88EE263 pKa = 6.24NGAAEE268 pKa = 4.29TPQYY272 pKa = 11.0VSSDD276 pKa = 3.13AKK278 pKa = 10.84AAWGDD283 pKa = 3.92YY284 pKa = 10.64YY285 pKa = 10.41IVDD288 pKa = 3.78YY289 pKa = 10.59LVPGVGGTTSDD300 pKa = 3.93VVNLNCTATLYY311 pKa = 9.4WHH313 pKa = 7.01EE314 pKa = 4.29KK315 pKa = 9.3

Molecular weight: 35.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

647

315

332

323.5

36.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.11 ± 0.804

1.7 ± 0.302

6.646 ± 0.878

4.019 ± 1.708

4.637 ± 1.027

9.119 ± 1.5

1.546 ± 0.64

3.709 ± 0.376

4.946 ± 0.54

6.646 ± 0.655

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.7 ± 0.367

4.328 ± 1.866

4.946 ± 0.798

2.782 ± 0.276

7.264 ± 0.918

8.501 ± 0.942

6.646 ± 2.691

6.801 ± 0.986

2.782 ± 0.393

4.173 ± 0.86
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski