Rodent stool-associated circular genome virus

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 6.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G1C9H6|G1C9H6_9VIRU ATP-dependent helicase Rep OS=Rodent stool-associated circular genome virus OX=1074214 PE=3 SV=1
MM1 pKa = 7.64CVRR4 pKa = 11.84IKK6 pKa = 8.29MTQATWWLGTKK17 pKa = 9.83FVHH20 pKa = 6.32EE21 pKa = 4.14AHH23 pKa = 6.84DD24 pKa = 3.79TEE26 pKa = 4.15EE27 pKa = 3.96WMRR30 pKa = 11.84DD31 pKa = 3.11LAEE34 pKa = 4.24SGKK37 pKa = 10.62VKK39 pKa = 10.7FITGQRR45 pKa = 11.84EE46 pKa = 4.14LCPEE50 pKa = 4.37TMRR53 pKa = 11.84HH54 pKa = 5.02HH55 pKa = 5.8VQFVVNLHH63 pKa = 6.06RR64 pKa = 11.84SQRR67 pKa = 11.84LSYY70 pKa = 10.2LKK72 pKa = 10.62KK73 pKa = 9.93IDD75 pKa = 5.13GEE77 pKa = 4.38AHH79 pKa = 5.71WEE81 pKa = 4.37SVRR84 pKa = 11.84GTPKK88 pKa = 10.09QARR91 pKa = 11.84DD92 pKa = 3.51YY93 pKa = 8.99CTKK96 pKa = 10.45EE97 pKa = 3.74DD98 pKa = 3.69TRR100 pKa = 11.84FDD102 pKa = 4.11GPWEE106 pKa = 4.03FGKK109 pKa = 10.72CLEE112 pKa = 4.49PGQRR116 pKa = 11.84RR117 pKa = 11.84GYY119 pKa = 10.3DD120 pKa = 3.16EE121 pKa = 5.59AVAAVCSGRR130 pKa = 11.84CLAEE134 pKa = 3.96VASEE138 pKa = 4.26YY139 pKa = 9.17PQVWVKK145 pKa = 10.29YY146 pKa = 10.19GRR148 pKa = 11.84GLVDD152 pKa = 3.63LRR154 pKa = 11.84KK155 pKa = 9.42QLRR158 pKa = 11.84LDD160 pKa = 3.15SDD162 pKa = 3.48RR163 pKa = 11.84RR164 pKa = 11.84QFDD167 pKa = 3.93DD168 pKa = 4.38NGPEE172 pKa = 4.04LWIFWGPSGTGKK184 pKa = 10.15SKK186 pKa = 10.58RR187 pKa = 11.84ANEE190 pKa = 4.23TWPDD194 pKa = 3.98AYY196 pKa = 9.82WKK198 pKa = 10.6IPGEE202 pKa = 4.2KK203 pKa = 8.69WWDD206 pKa = 3.48GYY208 pKa = 9.06TNQDD212 pKa = 3.14TVILDD217 pKa = 3.66DD218 pKa = 4.17FKK220 pKa = 11.6GSFMRR225 pKa = 11.84LTDD228 pKa = 3.77FQRR231 pKa = 11.84LIDD234 pKa = 5.33RR235 pKa = 11.84YY236 pKa = 8.75PLWVEE241 pKa = 4.05VKK243 pKa = 10.43GGSIPMLATRR253 pKa = 11.84YY254 pKa = 10.2VITSNEE260 pKa = 3.91APEE263 pKa = 4.02AWYY266 pKa = 10.39ASADD270 pKa = 3.35PHH272 pKa = 5.4GTVTRR277 pKa = 11.84RR278 pKa = 11.84CNDD281 pKa = 2.82FTDD284 pKa = 3.69GGRR287 pKa = 11.84RR288 pKa = 11.84IIYY291 pKa = 9.55IGPEE295 pKa = 3.89RR296 pKa = 11.84QEE298 pKa = 4.64LPDD301 pKa = 3.73FEE303 pKa = 5.84SWVGWGEE310 pKa = 3.85FARR313 pKa = 4.7

Molecular weight: 36.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G1C9H6|G1C9H6_9VIRU ATP-dependent helicase Rep OS=Rodent stool-associated circular genome virus OX=1074214 PE=3 SV=1
MM1 pKa = 7.64CVRR4 pKa = 11.84IKK6 pKa = 8.29MTQATWWLGTKK17 pKa = 9.83FVHH20 pKa = 6.32EE21 pKa = 4.14AHH23 pKa = 6.84DD24 pKa = 3.79TEE26 pKa = 4.15EE27 pKa = 3.96WMRR30 pKa = 11.84DD31 pKa = 3.11LAEE34 pKa = 4.24SGKK37 pKa = 10.62VKK39 pKa = 10.7FITGQRR45 pKa = 11.84EE46 pKa = 4.14LCPEE50 pKa = 4.37TMRR53 pKa = 11.84HH54 pKa = 5.02HH55 pKa = 5.8VQFVVNLHH63 pKa = 6.06RR64 pKa = 11.84SQRR67 pKa = 11.84LSYY70 pKa = 10.2LKK72 pKa = 10.62KK73 pKa = 9.93IDD75 pKa = 5.13GEE77 pKa = 4.38AHH79 pKa = 5.71WEE81 pKa = 4.37SVRR84 pKa = 11.84GTPKK88 pKa = 10.09QARR91 pKa = 11.84DD92 pKa = 3.51YY93 pKa = 8.99CTKK96 pKa = 10.45EE97 pKa = 3.74DD98 pKa = 3.69TRR100 pKa = 11.84FDD102 pKa = 4.11GPWEE106 pKa = 4.03FGKK109 pKa = 10.72CLEE112 pKa = 4.49PGQRR116 pKa = 11.84RR117 pKa = 11.84GYY119 pKa = 10.3DD120 pKa = 3.16EE121 pKa = 5.59AVAAVCSGRR130 pKa = 11.84CLAEE134 pKa = 3.96VASEE138 pKa = 4.26YY139 pKa = 9.17PQVWVKK145 pKa = 10.29YY146 pKa = 10.19GRR148 pKa = 11.84GLVDD152 pKa = 3.63LRR154 pKa = 11.84KK155 pKa = 9.42QLRR158 pKa = 11.84LDD160 pKa = 3.15SDD162 pKa = 3.48RR163 pKa = 11.84RR164 pKa = 11.84QFDD167 pKa = 3.93DD168 pKa = 4.38NGPEE172 pKa = 4.04LWIFWGPSGTGKK184 pKa = 10.15SKK186 pKa = 10.58RR187 pKa = 11.84ANEE190 pKa = 4.23TWPDD194 pKa = 3.98AYY196 pKa = 9.82WKK198 pKa = 10.6IPGEE202 pKa = 4.2KK203 pKa = 8.69WWDD206 pKa = 3.48GYY208 pKa = 9.06TNQDD212 pKa = 3.14TVILDD217 pKa = 3.66DD218 pKa = 4.17FKK220 pKa = 11.6GSFMRR225 pKa = 11.84LTDD228 pKa = 3.77FQRR231 pKa = 11.84LIDD234 pKa = 5.33RR235 pKa = 11.84YY236 pKa = 8.75PLWVEE241 pKa = 4.05VKK243 pKa = 10.43GGSIPMLATRR253 pKa = 11.84YY254 pKa = 10.2VITSNEE260 pKa = 3.91APEE263 pKa = 4.02AWYY266 pKa = 10.39ASADD270 pKa = 3.35PHH272 pKa = 5.4GTVTRR277 pKa = 11.84RR278 pKa = 11.84CNDD281 pKa = 2.82FTDD284 pKa = 3.69GGRR287 pKa = 11.84RR288 pKa = 11.84IIYY291 pKa = 9.55IGPEE295 pKa = 3.89RR296 pKa = 11.84QEE298 pKa = 4.64LPDD301 pKa = 3.73FEE303 pKa = 5.84SWVGWGEE310 pKa = 3.85FARR313 pKa = 4.7

Molecular weight: 36.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

313

313

313

313.0

36.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.751 ± 0.0

2.236 ± 0.0

7.348 ± 0.0

7.668 ± 0.0

4.153 ± 0.0

8.626 ± 0.0

2.236 ± 0.0

3.834 ± 0.0

5.431 ± 0.0

6.07 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.917 ± 0.0

1.917 ± 0.0

4.792 ± 0.0

3.834 ± 0.0

8.946 ± 0.0

4.473 ± 0.0

6.07 ± 0.0

6.07 ± 0.0

5.112 ± 0.0

3.514 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski