Gammapapillomavirus 9

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.23

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2ALP6|A0A2D2ALP6_9PAPI Major capsid protein L1 OS=Gammapapillomavirus 9 OX=1175851 GN=L1 PE=3 SV=1
MM1 pKa = 6.99NRR3 pKa = 11.84SRR5 pKa = 11.84RR6 pKa = 11.84KK7 pKa = 9.06RR8 pKa = 11.84ASPTEE13 pKa = 4.19LYY15 pKa = 10.22KK16 pKa = 10.83SCAMGGDD23 pKa = 4.97CIPDD27 pKa = 3.29VKK29 pKa = 11.11NKK31 pKa = 10.15IEE33 pKa = 4.16GTTLADD39 pKa = 2.99ILLKK43 pKa = 11.03VFGSVIYY50 pKa = 10.49LGNLGIGTGRR60 pKa = 11.84GSGGQYY66 pKa = 10.53GYY68 pKa = 9.21TPFGGTKK75 pKa = 8.31PTTSATPLRR84 pKa = 11.84PSIPTDD90 pKa = 3.47TVVTGDD96 pKa = 3.92ILPVTPYY103 pKa = 11.05DD104 pKa = 3.69SAIVPLTDD112 pKa = 4.25GLPEE116 pKa = 3.87PAIIDD121 pKa = 3.92TPGVGPGLPTDD132 pKa = 3.76SVTVTTTIDD141 pKa = 4.22PISEE145 pKa = 4.03VTGVGEE151 pKa = 4.39HH152 pKa = 6.97PNVIYY157 pKa = 10.94NADD160 pKa = 3.38NVAQLDD166 pKa = 4.17VQLQPPPPKK175 pKa = 10.16KK176 pKa = 10.68VILDD180 pKa = 3.63ASIHH184 pKa = 4.58NTEE187 pKa = 4.46TNIHH191 pKa = 4.7THH193 pKa = 6.3ASHH196 pKa = 6.8VDD198 pKa = 2.75SDD200 pKa = 4.09YY201 pKa = 11.48TVFVDD206 pKa = 3.89AQFHH210 pKa = 6.4GEE212 pKa = 4.04HH213 pKa = 6.65IGPVEE218 pKa = 4.21EE219 pKa = 6.17IEE221 pKa = 4.15LQSINLRR228 pKa = 11.84EE229 pKa = 3.97EE230 pKa = 4.09FEE232 pKa = 4.12IDD234 pKa = 3.22EE235 pKa = 5.19GPLKK239 pKa = 10.0STPLSSRR246 pKa = 11.84LINRR250 pKa = 11.84TRR252 pKa = 11.84DD253 pKa = 3.09LYY255 pKa = 11.18HH256 pKa = 6.95RR257 pKa = 11.84FVEE260 pKa = 4.31QVPTQKK266 pKa = 10.52EE267 pKa = 4.45VVLSRR272 pKa = 11.84PGVTYY277 pKa = 10.4EE278 pKa = 4.16FEE280 pKa = 4.5NPAFDD285 pKa = 5.1PDD287 pKa = 4.09VIDD290 pKa = 3.46VFEE293 pKa = 5.3RR294 pKa = 11.84EE295 pKa = 4.21VQEE298 pKa = 4.44VARR301 pKa = 11.84TAPLEE306 pKa = 4.16DD307 pKa = 3.66TQDD310 pKa = 3.71VIRR313 pKa = 11.84LGDD316 pKa = 3.45TRR318 pKa = 11.84FDD320 pKa = 3.42EE321 pKa = 4.72SPRR324 pKa = 11.84GTVRR328 pKa = 11.84VSRR331 pKa = 11.84LGQRR335 pKa = 11.84SGMITRR341 pKa = 11.84SGLQIGKK348 pKa = 9.33RR349 pKa = 11.84VHH351 pKa = 6.69FYY353 pKa = 11.36YY354 pKa = 10.5DD355 pKa = 3.04VSPIAGEE362 pKa = 4.26AIEE365 pKa = 4.32LRR367 pKa = 11.84TVGEE371 pKa = 4.23YY372 pKa = 10.01SHH374 pKa = 6.86EE375 pKa = 4.17SSIVDD380 pKa = 3.62EE381 pKa = 4.64LTTSSFVNPFEE392 pKa = 4.16MPIDD396 pKa = 3.9SSLQFSDD403 pKa = 5.57DD404 pKa = 3.66MLLEE408 pKa = 4.35SATEE412 pKa = 4.06DD413 pKa = 3.61FSNSHH418 pKa = 6.84VILTNTEE425 pKa = 3.81TDD427 pKa = 3.11GDD429 pKa = 4.51AIDD432 pKa = 4.78IPVNLPNEE440 pKa = 4.29GVKK443 pKa = 10.59VFVDD447 pKa = 5.67DD448 pKa = 3.57YY449 pKa = 9.16TQPLFVSHH457 pKa = 7.78PINVDD462 pKa = 3.03TSVIDD467 pKa = 3.77FDD469 pKa = 4.19TPLIPFQPSFGLDD482 pKa = 3.2VNYY485 pKa = 10.14FDD487 pKa = 5.84YY488 pKa = 11.07DD489 pKa = 3.36IHH491 pKa = 7.22PSLLLRR497 pKa = 11.84KK498 pKa = 9.26RR499 pKa = 11.84KK500 pKa = 9.87YY501 pKa = 10.18PVFFTLL507 pKa = 4.95

Molecular weight: 55.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2ALI8|A0A2D2ALI8_9PAPI Protein E7 OS=Gammapapillomavirus 9 OX=1175851 GN=E7 PE=3 SV=1
MM1 pKa = 6.91EE2 pKa = 4.86TLRR5 pKa = 11.84PTDD8 pKa = 3.62LKK10 pKa = 11.06SYY12 pKa = 8.9CTIFGIDD19 pKa = 3.71FFEE22 pKa = 5.15LHH24 pKa = 6.27LQCIFCNCYY33 pKa = 10.42LSLVDD38 pKa = 5.81LADD41 pKa = 5.18FYY43 pKa = 10.63TKK45 pKa = 10.29CLCLVWRR52 pKa = 11.84VGKK55 pKa = 10.13AHH57 pKa = 7.09ACCAKK62 pKa = 10.16CLCLSAKK69 pKa = 10.42CEE71 pKa = 4.23LEE73 pKa = 4.04RR74 pKa = 11.84HH75 pKa = 4.99VQCSAKK81 pKa = 10.18VVNLHH86 pKa = 6.34SLTNKK91 pKa = 9.15PLCEE95 pKa = 3.94LKK97 pKa = 10.77VRR99 pKa = 11.84CCQCLALLDD108 pKa = 4.17LQEE111 pKa = 4.62KK112 pKa = 9.9CDD114 pKa = 3.71LVARR118 pKa = 11.84GKK120 pKa = 9.98DD121 pKa = 3.19AYY123 pKa = 10.58LVRR126 pKa = 11.84GNWRR130 pKa = 11.84APCRR134 pKa = 11.84KK135 pKa = 10.06CIDD138 pKa = 3.53RR139 pKa = 11.84EE140 pKa = 4.05II141 pKa = 5.35

Molecular weight: 16.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2377

98

597

339.6

38.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.721 ± 0.563

2.65 ± 0.928

7.068 ± 0.477

6.142 ± 0.535

4.544 ± 0.507

5.09 ± 0.725

2.188 ± 0.345

4.754 ± 0.794

5.469 ± 0.677

9.382 ± 0.546

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.43 ± 0.241

4.88 ± 0.392

6.31 ± 1.029

4.249 ± 0.591

5.848 ± 0.706

7.404 ± 0.449

5.89 ± 0.675

6.479 ± 0.787

1.262 ± 0.366

3.239 ± 0.333
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski