Tenacibaculum adriaticum

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tenacibaculum

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2925 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5S5DUB3|A0A5S5DUB3_9FLAO DNA repair protein RecN OS=Tenacibaculum adriaticum OX=413713 GN=C7447_102697 PE=3 SV=1
MM1 pKa = 7.27NLIKK5 pKa = 10.45KK6 pKa = 10.4SSIQLIIIILFISITACNGDD26 pKa = 3.97DD27 pKa = 5.44DD28 pKa = 6.4DD29 pKa = 7.13DD30 pKa = 4.93EE31 pKa = 5.01FGNWVEE37 pKa = 4.53SSIFDD42 pKa = 3.62GDD44 pKa = 3.39SRR46 pKa = 11.84ANAVSFTIGTNGYY59 pKa = 9.86LVTGYY64 pKa = 10.78DD65 pKa = 3.58GDD67 pKa = 5.54DD68 pKa = 3.69YY69 pKa = 11.84LSDD72 pKa = 2.86TWEE75 pKa = 4.16YY76 pKa = 11.42NSEE79 pKa = 3.74DD80 pKa = 4.42DD81 pKa = 4.01YY82 pKa = 10.15WTKK85 pKa = 10.83KK86 pKa = 10.76ADD88 pKa = 3.74FPGIARR94 pKa = 11.84SGAVGFSIDD103 pKa = 3.16GKK105 pKa = 10.63GYY107 pKa = 10.61LGTGYY112 pKa = 10.67DD113 pKa = 5.55GEE115 pKa = 5.73DD116 pKa = 3.59EE117 pKa = 6.12LNDD120 pKa = 3.45FWEE123 pKa = 4.51YY124 pKa = 11.64NPDD127 pKa = 3.47TDD129 pKa = 4.74SWTQKK134 pKa = 11.08ADD136 pKa = 3.5FGGTARR142 pKa = 11.84YY143 pKa = 8.63GAIGFSLNNDD153 pKa = 3.52GYY155 pKa = 10.59IGTGYY160 pKa = 10.59DD161 pKa = 3.23GSEE164 pKa = 3.78QKK166 pKa = 11.07DD167 pKa = 3.41FWKK170 pKa = 11.17YY171 pKa = 8.7NTTTDD176 pKa = 2.32TWEE179 pKa = 3.94QVVGFGGQKK188 pKa = 10.22RR189 pKa = 11.84KK190 pKa = 9.78DD191 pKa = 3.35ASVFTIDD198 pKa = 3.22NIAYY202 pKa = 9.46IGLGIHH208 pKa = 6.09NGSYY212 pKa = 11.0EE213 pKa = 3.98EE214 pKa = 4.84DD215 pKa = 4.02FYY217 pKa = 12.0SFDD220 pKa = 3.24GSIWTRR226 pKa = 11.84LSDD229 pKa = 5.63LDD231 pKa = 6.01DD232 pKa = 6.65DD233 pKa = 6.52DD234 pKa = 7.75DD235 pKa = 7.54DD236 pKa = 7.25DD237 pKa = 6.78DD238 pKa = 6.67DD239 pKa = 5.68YY240 pKa = 11.91EE241 pKa = 5.08ILLSSGVGFSINGKK255 pKa = 10.11GYY257 pKa = 8.19ITTGVSGSITTEE269 pKa = 3.28SWEE272 pKa = 4.22YY273 pKa = 10.49TPSTDD278 pKa = 2.79TWEE281 pKa = 4.08EE282 pKa = 3.83LPAFEE287 pKa = 5.74GSARR291 pKa = 11.84QNASAFTFATSAYY304 pKa = 9.65VLMGRR309 pKa = 11.84SGSYY313 pKa = 10.52YY314 pKa = 10.31FDD316 pKa = 4.55DD317 pKa = 3.26VWEE320 pKa = 4.43FRR322 pKa = 11.84PDD324 pKa = 3.3EE325 pKa = 4.77LEE327 pKa = 4.5NEE329 pKa = 4.27DD330 pKa = 4.74DD331 pKa = 3.7

Molecular weight: 36.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5S5DTX7|A0A5S5DTX7_9FLAO Phytoene/squalene synthetase OS=Tenacibaculum adriaticum OX=413713 GN=C7447_102683 PE=4 SV=1
MM1 pKa = 8.03PKK3 pKa = 8.97RR4 pKa = 11.84TYY6 pKa = 10.33QPSKK10 pKa = 9.01RR11 pKa = 11.84KK12 pKa = 9.47RR13 pKa = 11.84RR14 pKa = 11.84NKK16 pKa = 9.49HH17 pKa = 3.94GFRR20 pKa = 11.84EE21 pKa = 4.27RR22 pKa = 11.84MASANGRR29 pKa = 11.84KK30 pKa = 9.04VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.04GRR40 pKa = 11.84KK41 pKa = 8.64SLTVSSAPRR50 pKa = 11.84PKK52 pKa = 10.38KK53 pKa = 10.5

Molecular weight: 6.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2925

0

2925

971420

30

2624

332.1

37.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.896 ± 0.047

0.696 ± 0.014

5.402 ± 0.042

6.744 ± 0.044

5.376 ± 0.039

6.203 ± 0.046

1.699 ± 0.022

8.385 ± 0.049

8.613 ± 0.056

9.228 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.074 ± 0.021

6.54 ± 0.052

3.17 ± 0.023

3.311 ± 0.024

3.181 ± 0.031

6.499 ± 0.038

5.821 ± 0.046

6.182 ± 0.039

0.979 ± 0.016

3.999 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski