Cellvibrio sp. PSBB006

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Cellvibrionaceae; Cellvibrio; unclassified Cellvibrio

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4268 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y0FSD2|A0A1Y0FSD2_9GAMM Agmatine deiminase OS=Cellvibrio sp. PSBB006 OX=1987723 GN=CBR65_01995 PE=4 SV=1
MM1 pKa = 7.25FKK3 pKa = 10.54VLPILLSVFLLISCGGGGGGGSSDD27 pKa = 3.35GGEE30 pKa = 4.35TRR32 pKa = 11.84SSTSSSSSSSEE43 pKa = 3.78SSSSVTSSSQSSSSDD58 pKa = 3.02SSSSVAPNEE67 pKa = 4.15APTASAGEE75 pKa = 4.01DD76 pKa = 3.28QIVQGGFTVQLTAAGSADD94 pKa = 3.72PEE96 pKa = 4.89GEE98 pKa = 4.1TLTYY102 pKa = 10.61EE103 pKa = 4.18WMQVTEE109 pKa = 4.21HH110 pKa = 6.69NIMYY114 pKa = 8.01VTADD118 pKa = 3.4GTITEE123 pKa = 4.48EE124 pKa = 4.81MDD126 pKa = 3.41TQDD129 pKa = 3.59LFVYY133 pKa = 10.46IPATEE138 pKa = 4.05AGKK141 pKa = 10.59EE142 pKa = 4.08YY143 pKa = 10.14TFSLTVSDD151 pKa = 4.12GTHH154 pKa = 5.54TSEE157 pKa = 5.21ADD159 pKa = 3.51TVTLTVADD167 pKa = 4.3CFEE170 pKa = 5.17GDD172 pKa = 2.81GDD174 pKa = 4.75VFIEE178 pKa = 5.32CIDD181 pKa = 3.92PSWFGISSYY190 pKa = 9.88QEE192 pKa = 3.39IDD194 pKa = 3.23GNAGNNFYY202 pKa = 11.38SNGIDD207 pKa = 3.31NHH209 pKa = 6.3VNWSLVDD216 pKa = 4.1LEE218 pKa = 5.36DD219 pKa = 4.69GEE221 pKa = 4.85HH222 pKa = 6.55NNVIDD227 pKa = 4.7VKK229 pKa = 10.2FLRR232 pKa = 11.84NDD234 pKa = 2.8SSGNFTIAAPTPEE247 pKa = 4.47NADD250 pKa = 3.35MPAIDD255 pKa = 4.01MTDD258 pKa = 3.94FANGYY263 pKa = 9.73IKK265 pKa = 10.57FDD267 pKa = 3.41VRR269 pKa = 11.84AVGTTDD275 pKa = 3.62PLTLFLSIQCGYY287 pKa = 9.66PCGTSTPWTVEE298 pKa = 3.95TLPDD302 pKa = 3.99SEE304 pKa = 4.4WTSVTIWVEE313 pKa = 3.68NLIDD317 pKa = 4.86LEE319 pKa = 4.56LDD321 pKa = 3.3VSKK324 pKa = 10.91ISTALLINPQWVNQADD340 pKa = 3.9VNFQLDD346 pKa = 3.64NIRR349 pKa = 11.84WEE351 pKa = 4.24KK352 pKa = 10.78ASCDD356 pKa = 3.58DD357 pKa = 3.71APNVVFSNCLIQDD370 pKa = 3.75DD371 pKa = 4.71RR372 pKa = 11.84SASGWDD378 pKa = 3.44EE379 pKa = 4.88DD380 pKa = 3.81GGFYY384 pKa = 10.92GLPDD388 pKa = 4.87PDD390 pKa = 4.26NHH392 pKa = 6.64ISWLEE397 pKa = 3.79IFSGDD402 pKa = 3.5EE403 pKa = 3.67GHH405 pKa = 6.68NDD407 pKa = 3.32VIEE410 pKa = 4.03VSFNNDD416 pKa = 2.9TQSSSFSIIPVPLASMDD433 pKa = 3.91LSAYY437 pKa = 10.07AAGEE441 pKa = 4.05MVFDD445 pKa = 4.36YY446 pKa = 11.47KK447 pKa = 10.55MVSNPHH453 pKa = 6.8ADD455 pKa = 3.38TNLFATVQCGDD466 pKa = 3.51WPCAGGEE473 pKa = 3.99FLLDD477 pKa = 3.37KK478 pKa = 11.33SEE480 pKa = 4.29FGVWKK485 pKa = 10.19EE486 pKa = 3.82MRR488 pKa = 11.84ISVADD493 pKa = 4.17MIDD496 pKa = 3.25NDD498 pKa = 4.3LDD500 pKa = 3.49IMQVSTWFTLIPTYY514 pKa = 10.23GQPQSGIRR522 pKa = 11.84VEE524 pKa = 4.05LDD526 pKa = 3.12NIRR529 pKa = 11.84WEE531 pKa = 4.21EE532 pKa = 3.78

Molecular weight: 57.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y0FYY1|A0A1Y0FYY1_9GAMM Uncharacterized protein OS=Cellvibrio sp. PSBB006 OX=1987723 GN=CBR65_15130 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 9.95RR12 pKa = 11.84VRR14 pKa = 11.84NHH16 pKa = 5.46GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.35NGRR28 pKa = 11.84LVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.14GRR39 pKa = 11.84KK40 pKa = 8.34QLTII44 pKa = 3.64

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4268

0

4268

1542520

38

5127

361.4

40.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.426 ± 0.041

0.935 ± 0.013

5.799 ± 0.035

5.878 ± 0.034

3.981 ± 0.024

7.174 ± 0.054

2.304 ± 0.024

5.898 ± 0.027

4.098 ± 0.039

10.345 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.308 ± 0.018

4.242 ± 0.05

4.376 ± 0.025

4.445 ± 0.033

5.397 ± 0.038

6.396 ± 0.042

5.538 ± 0.04

6.895 ± 0.028

1.465 ± 0.018

3.099 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski