Thermomonas sp. SY21

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Thermomonas; unclassified Thermomonas

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2753 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B7ZTF1|A0A5B7ZTF1_9GAMM Uncharacterized protein OS=Thermomonas sp. SY21 OX=2202149 GN=FHQ07_06950 PE=4 SV=1
MM1 pKa = 7.65SDD3 pKa = 3.12SAAVDD8 pKa = 3.36APYY11 pKa = 8.83RR12 pKa = 11.84TWMCVVCGFVYY23 pKa = 10.68DD24 pKa = 4.02EE25 pKa = 4.77ALGLPEE31 pKa = 6.22DD32 pKa = 4.81GIEE35 pKa = 4.57PGTRR39 pKa = 11.84WEE41 pKa = 5.53DD42 pKa = 3.72IPDD45 pKa = 3.14TWTCPDD51 pKa = 4.14CGVSKK56 pKa = 11.13DD57 pKa = 3.95DD58 pKa = 3.8FEE60 pKa = 5.87LMRR63 pKa = 11.84GG64 pKa = 3.51

Molecular weight: 7.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B7ZNZ4|A0A5B7ZNZ4_9GAMM NADH-quinone oxidoreductase OS=Thermomonas sp. SY21 OX=2202149 GN=nuoG PE=3 SV=1
MM1 pKa = 7.15STGTCAMRR9 pKa = 11.84LPGRR13 pKa = 11.84STNSAISTTPRR24 pKa = 11.84TCAPPISRR32 pKa = 11.84DD33 pKa = 2.98WKK35 pKa = 9.8RR36 pKa = 11.84PPGKK40 pKa = 9.36RR41 pKa = 11.84ARR43 pKa = 11.84RR44 pKa = 11.84AWRR47 pKa = 11.84MPACCRR53 pKa = 11.84PRR55 pKa = 11.84WRR57 pKa = 11.84RR58 pKa = 11.84RR59 pKa = 11.84GRR61 pKa = 11.84DD62 pKa = 2.85RR63 pKa = 11.84AAFPLGGRR71 pKa = 11.84PGSRR75 pKa = 11.84RR76 pKa = 11.84LAASWPPRR84 pKa = 11.84VRR86 pKa = 11.84LGVGLGYY93 pKa = 7.78GTCAGPMEE101 pKa = 4.75SAMHH105 pKa = 6.27APNRR109 pKa = 11.84FRR111 pKa = 11.84IALLLCGGALAAGGAMAARR130 pKa = 11.84PAASAGEE137 pKa = 4.34CFASAFEE144 pKa = 4.88SGDD147 pKa = 3.15ADD149 pKa = 5.44AIAACYY155 pKa = 10.6AEE157 pKa = 5.63DD158 pKa = 4.97AIIWFPGGSMAKK170 pKa = 9.78GRR172 pKa = 11.84AAIRR176 pKa = 11.84DD177 pKa = 3.91GFAHH181 pKa = 6.73FLAGATVKK189 pKa = 10.44DD190 pKa = 4.0FQMTNIGQEE199 pKa = 4.21SVGDD203 pKa = 3.92SRR205 pKa = 11.84VSWGTYY211 pKa = 7.27VIRR214 pKa = 11.84MVDD217 pKa = 3.11KK218 pKa = 10.73ASQAEE223 pKa = 4.36SVQTGRR229 pKa = 11.84YY230 pKa = 7.43TDD232 pKa = 3.45VQKK235 pKa = 11.13LVDD238 pKa = 4.23GRR240 pKa = 11.84WLYY243 pKa = 10.56IVDD246 pKa = 4.71HH247 pKa = 7.09PSDD250 pKa = 4.73DD251 pKa = 3.87PAPPAKK257 pKa = 10.44

Molecular weight: 27.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2753

0

2753

912151

32

2007

331.3

35.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.764 ± 0.083

0.86 ± 0.016

6.076 ± 0.036

5.268 ± 0.042

3.412 ± 0.03

8.761 ± 0.053

2.188 ± 0.025

4.215 ± 0.03

3.173 ± 0.04

10.745 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.261 ± 0.02

2.529 ± 0.034

5.211 ± 0.038

3.625 ± 0.028

7.698 ± 0.054

4.894 ± 0.037

4.422 ± 0.042

7.041 ± 0.038

1.533 ± 0.021

2.324 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski