Carboxylicivirga sp. M1479

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Marinilabiliales; Marinilabiliaceae; Carboxylicivirga; unclassified Carboxylicivirga

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4095 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A553FRB2|A0A553FRB2_9BACT Uncharacterized protein OS=Carboxylicivirga sp. M1479 OX=2594476 GN=FNN09_20845 PE=4 SV=1
MM1 pKa = 7.46LLVLVVAFSACKK13 pKa = 10.47DD14 pKa = 4.06DD15 pKa = 6.39DD16 pKa = 5.94DD17 pKa = 7.39DD18 pKa = 5.17DD19 pKa = 6.06APTTGIIKK27 pKa = 8.81GTVTDD32 pKa = 3.8AANNEE37 pKa = 4.24TLSDD41 pKa = 3.64VSIMVFDD48 pKa = 3.68ATTNEE53 pKa = 4.62TIGEE57 pKa = 4.44TIMSGADD64 pKa = 3.05GMYY67 pKa = 10.43SVTLDD72 pKa = 3.24PGTYY76 pKa = 9.17YY77 pKa = 11.18LKK79 pKa = 10.73LFKK82 pKa = 10.18QGYY85 pKa = 8.35NNNPPAGVPPLNISVSEE102 pKa = 4.2GSEE105 pKa = 4.07SVNDD109 pKa = 4.19FKK111 pKa = 11.16MQASEE116 pKa = 4.12VLDD119 pKa = 4.18GGSLTGKK126 pKa = 10.42VMLGSNGVQGAYY138 pKa = 10.67VLVTSGTMGYY148 pKa = 9.85SAVSDD153 pKa = 3.52KK154 pKa = 11.19DD155 pKa = 3.32GHH157 pKa = 5.5FFIYY161 pKa = 10.07NVPAATYY168 pKa = 8.95TLTAYY173 pKa = 9.78KK174 pKa = 9.76INHH177 pKa = 6.53NATPLSVTVTADD189 pKa = 2.98ANTEE193 pKa = 4.23GNVNLTEE200 pKa = 4.4GASTSLSGTLTFLATEE216 pKa = 4.43GKK218 pKa = 9.86DD219 pKa = 3.38VNVNLLHH226 pKa = 6.5PTTNEE231 pKa = 4.46PIPGLVDD238 pKa = 3.16MSEE241 pKa = 3.94NMSYY245 pKa = 10.71SLSGIPDD252 pKa = 3.2GDD254 pKa = 4.05YY255 pKa = 10.8LVKK258 pKa = 10.82ASFEE262 pKa = 4.0NDD264 pKa = 3.31TYY266 pKa = 11.73VVDD269 pKa = 4.53PDD271 pKa = 4.17WIIKK275 pKa = 10.25NGEE278 pKa = 3.96PMLTANGSAVVIDD291 pKa = 4.78FSLTNAVTLNSPTNPMSTTVPIEE314 pKa = 4.02IASTTPTFEE323 pKa = 3.77WTSYY327 pKa = 10.8SSSSDD332 pKa = 3.46YY333 pKa = 11.17VIEE336 pKa = 4.38VSDD339 pKa = 4.22ANGNVIWGGINDD351 pKa = 4.43GVDD354 pKa = 3.42PPLKK358 pKa = 10.55NITIPSSTTSIAYY371 pKa = 10.23NSDD374 pKa = 2.73GMATIPNLEE383 pKa = 3.98YY384 pKa = 10.94DD385 pKa = 3.62VVYY388 pKa = 10.11RR389 pKa = 11.84WKK391 pKa = 10.4IYY393 pKa = 10.05ASKK396 pKa = 11.26NNVQEE401 pKa = 3.85PSGWNLISVSEE412 pKa = 4.09DD413 pKa = 3.12QMGLFIVKK421 pKa = 8.96EE422 pKa = 4.08QQQ424 pKa = 2.75

Molecular weight: 45.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A553GPZ8|A0A553GPZ8_9BACT Uncharacterized protein OS=Carboxylicivirga sp. M1479 OX=2594476 GN=FNN09_06090 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84KK11 pKa = 8.89RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.89HH16 pKa = 3.93GFRR19 pKa = 11.84EE20 pKa = 4.27RR21 pKa = 11.84MASANGRR28 pKa = 11.84KK29 pKa = 9.12VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.05GRR39 pKa = 11.84KK40 pKa = 8.34KK41 pKa = 10.71LSVSSEE47 pKa = 3.93KK48 pKa = 10.19RR49 pKa = 11.84HH50 pKa = 5.73KK51 pKa = 10.69AA52 pKa = 3.17

Molecular weight: 6.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4095

0

4095

1561341

34

6495

381.3

42.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.626 ± 0.034

0.875 ± 0.013

5.818 ± 0.032

6.588 ± 0.031

4.731 ± 0.026

6.632 ± 0.046

1.988 ± 0.018

7.39 ± 0.035

7.009 ± 0.058

9.221 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.509 ± 0.019

5.837 ± 0.036

3.396 ± 0.021

3.736 ± 0.023

3.697 ± 0.026

6.697 ± 0.035

5.305 ± 0.045

6.522 ± 0.035

1.182 ± 0.014

4.242 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski