Macacine betaherpesvirus 3 (Rhesus cytomegalovirus)

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Betaherpesvirinae; Cytomegalovirus

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 174 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I3WEZ2|I3WEZ2_9BETA Rh150 OS=Macacine betaherpesvirus 3 OX=47929 PE=4 SV=1
MM1 pKa = 7.68RR2 pKa = 11.84WLAMRR7 pKa = 11.84WLLLIVATSAKK18 pKa = 10.29ASSTTAGNTSTPTASTITSTVTTASTTNMSTPSPASSPATTNTTTSSPSPKK69 pKa = 10.11SSTSSTNTTITTTGTASATTPKK91 pKa = 10.4SSTSVTSSPANTTSTSTKK109 pKa = 7.5PTNVSSPTVSSPASNTSTTTSTTSTVNGTNSTTPKK144 pKa = 10.21TNTTSLPNTTADD156 pKa = 3.49MNVTTTEE163 pKa = 4.5PYY165 pKa = 10.96NSTGYY170 pKa = 11.03EE171 pKa = 3.7NVTINITTPSPYY183 pKa = 10.32EE184 pKa = 3.56PLQIVDD190 pKa = 4.74LCNEE194 pKa = 4.43TISIVFKK201 pKa = 11.15DD202 pKa = 3.83PGEE205 pKa = 4.03EE206 pKa = 3.86DD207 pKa = 5.01DD208 pKa = 4.31INEE211 pKa = 3.87SSEE214 pKa = 3.95YY215 pKa = 10.89SNEE218 pKa = 3.92EE219 pKa = 3.84PEE221 pKa = 4.52TNSEE225 pKa = 3.81EE226 pKa = 4.08DD227 pKa = 3.73TYY229 pKa = 11.23FPQSPGYY236 pKa = 7.88TLTYY240 pKa = 9.43DD241 pKa = 3.78TEE243 pKa = 4.17DD244 pKa = 3.27TIYY247 pKa = 10.65FQATCDD253 pKa = 4.87RR254 pKa = 11.84NDD256 pKa = 3.19TYY258 pKa = 11.81QNITSCDD265 pKa = 3.63YY266 pKa = 10.58TNKK269 pKa = 10.2SVNSWSTVTSVSFFPPTLTPCHH291 pKa = 6.64KK292 pKa = 9.58PLAIIKK298 pKa = 9.74IGNDD302 pKa = 3.25SLVVSASATSNLVDD316 pKa = 5.76AIYY319 pKa = 10.99KK320 pKa = 10.49LLGLPDD326 pKa = 3.8VNSDD330 pKa = 3.77FLNQLGRR337 pKa = 11.84YY338 pKa = 8.56HH339 pKa = 7.47PIILQGQIEE348 pKa = 4.25YY349 pKa = 10.26RR350 pKa = 11.84DD351 pKa = 3.61WYY353 pKa = 7.62TTEE356 pKa = 3.67

Molecular weight: 37.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I3WF96|I3WF96_9BETA Rh228.1 OS=Macacine betaherpesvirus 3 OX=47929 PE=4 SV=1
MM1 pKa = 6.63WHH3 pKa = 7.65AITVHH8 pKa = 5.76TPSGVASAARR18 pKa = 11.84AVNNALSDD26 pKa = 3.8LVCRR30 pKa = 11.84ISMLCARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84AVTQEE46 pKa = 3.52TATAGSSEE54 pKa = 3.83ARR56 pKa = 11.84QAEE59 pKa = 4.37QKK61 pKa = 10.23QEE63 pKa = 3.93QPQTSSSTSFLGRR76 pKa = 11.84ALVLVGQQLLAANQAACPPPAWLWKK101 pKa = 10.35

Molecular weight: 10.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

174

0

174

63229

73

2177

363.4

41.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.587 ± 0.145

2.649 ± 0.109

4.76 ± 0.139

5.183 ± 0.167

4.142 ± 0.126

4.552 ± 0.127

3.049 ± 0.092

5.21 ± 0.146

3.861 ± 0.133

9.87 ± 0.201

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.603 ± 0.079

4.332 ± 0.128

5.445 ± 0.192

3.924 ± 0.134

6.404 ± 0.169

7.947 ± 0.162

7.435 ± 0.272

6.94 ± 0.155

1.397 ± 0.084

3.71 ± 0.115
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski