Amino acid dipepetide frequency for Bandicoot papillomatosis carcinomatosis virus type 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.506AlaAla: 2.506 ± 1.693
0.0AlaCys: 0.0 ± 0.0
2.506AlaAsp: 2.506 ± 0.829
0.835AlaGlu: 0.835 ± 0.646
0.835AlaPhe: 0.835 ± 0.646
0.835AlaGly: 0.835 ± 0.646
2.506AlaHis: 2.506 ± 0.494
3.342AlaIle: 3.342 ± 0.725
2.506AlaLys: 2.506 ± 1.843
2.506AlaLeu: 2.506 ± 1.235
2.506AlaMet: 2.506 ± 0.494
4.177AlaAsn: 4.177 ± 1.102
4.177AlaPro: 4.177 ± 1.245
1.671AlaGln: 1.671 ± 0.418
2.506AlaArg: 2.506 ± 0.829
0.835AlaSer: 0.835 ± 0.908
2.506AlaThr: 2.506 ± 1.843
0.835AlaVal: 0.835 ± 0.646
0.0AlaTrp: 0.0 ± 0.0
0.0AlaTyr: 0.0 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.671CysAla: 1.671 ± 0.893
0.0CysCys: 0.0 ± 0.0
1.671CysAsp: 1.671 ± 1.816
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
2.506CysLys: 2.506 ± 1.235
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.835CysAsn: 0.835 ± 0.614
3.342CysPro: 3.342 ± 0.593
0.835CysGln: 0.835 ± 0.646
0.0CysArg: 0.0 ± 0.0
1.671CysSer: 1.671 ± 1.816
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.835CysTrp: 0.835 ± 0.614
1.671CysTyr: 1.671 ± 1.816
0.0CysXaa: 0.0 ± 0.0
Asp
1.671AspAla: 1.671 ± 0.418
0.835AspCys: 0.835 ± 0.614
4.177AspAsp: 4.177 ± 1.375
2.506AspGlu: 2.506 ± 1.235
3.342AspPhe: 3.342 ± 1.509
3.342AspGly: 3.342 ± 0.725
0.835AspHis: 0.835 ± 0.908
3.342AspIle: 3.342 ± 0.725
5.848AspLys: 5.848 ± 0.902
5.848AspLeu: 5.848 ± 0.365
1.671AspMet: 1.671 ± 0.893
5.013AspAsn: 5.013 ± 0.714
7.519AspPro: 7.519 ± 2.348
2.506AspGln: 2.506 ± 1.843
2.506AspArg: 2.506 ± 1.843
5.013AspSer: 5.013 ± 1.896
5.013AspThr: 5.013 ± 2.214
5.848AspVal: 5.848 ± 3.419
3.342AspTrp: 3.342 ± 2.566
0.835AspTyr: 0.835 ± 0.908
0.0AspXaa: 0.0 ± 0.0
Glu
4.177GluAla: 4.177 ± 1.375
0.0GluCys: 0.0 ± 0.0
7.519GluAsp: 7.519 ± 2.348
6.683GluGlu: 6.683 ± 1.449
2.506GluPhe: 2.506 ± 0.494
4.177GluGly: 4.177 ± 1.375
0.835GluHis: 0.835 ± 0.614
7.519GluIle: 7.519 ± 1.547
2.506GluLys: 2.506 ± 0.829
8.354GluLeu: 8.354 ± 1.484
0.835GluMet: 0.835 ± 0.646
2.506GluAsn: 2.506 ± 0.494
1.671GluPro: 1.671 ± 0.943
0.0GluGln: 0.0 ± 0.0
4.177GluArg: 4.177 ± 1.994
4.177GluSer: 4.177 ± 0.116
4.177GluThr: 4.177 ± 1.281
2.506GluVal: 2.506 ± 0.829
0.0GluTrp: 0.0 ± 0.0
2.506GluTyr: 2.506 ± 0.494
0.0GluXaa: 0.0 ± 0.0
Phe
0.835PheAla: 0.835 ± 0.614
1.671PheCys: 1.671 ± 1.816
3.342PheAsp: 3.342 ± 0.725
4.177PheGlu: 4.177 ± 1.161
1.671PhePhe: 1.671 ± 1.228
1.671PheGly: 1.671 ± 1.292
1.671PheHis: 1.671 ± 0.943
5.013PheIle: 5.013 ± 1.683
1.671PheLys: 1.671 ± 1.228
3.342PheLeu: 3.342 ± 0.593
0.0PheMet: 0.0 ± 0.0
3.342PheAsn: 3.342 ± 0.837
0.835PhePro: 0.835 ± 0.646
0.835PheGln: 0.835 ± 0.646
0.835PheArg: 0.835 ± 0.614
5.013PheSer: 5.013 ± 2.83
1.671PheThr: 1.671 ± 1.228
1.671PheVal: 1.671 ± 0.893
1.671PheTrp: 1.671 ± 1.228
2.506PheTyr: 2.506 ± 0.829
0.0PheXaa: 0.0 ± 0.0
Gly
2.506GlyAla: 2.506 ± 1.939
1.671GlyCys: 1.671 ± 0.893
6.683GlyAsp: 6.683 ± 2.886
1.671GlyGlu: 1.671 ± 0.418
2.506GlyPhe: 2.506 ± 1.693
10.86GlyGly: 10.86 ± 6.375
1.671GlyHis: 1.671 ± 0.893
4.177GlyIle: 4.177 ± 0.116
1.671GlyLys: 1.671 ± 1.228
1.671GlyLeu: 1.671 ± 0.418
0.0GlyMet: 0.0 ± 0.0
4.177GlyAsn: 4.177 ± 1.102
4.177GlyPro: 4.177 ± 2.641
3.342GlyGln: 3.342 ± 1.398
3.342GlyArg: 3.342 ± 0.725
4.177GlySer: 4.177 ± 1.102
9.19GlyThr: 9.19 ± 5.087
0.835GlyVal: 0.835 ± 0.614
0.0GlyTrp: 0.0 ± 0.0
1.671GlyTyr: 1.671 ± 0.418
0.0GlyXaa: 0.0 ± 0.0
His
0.835HisAla: 0.835 ± 0.614
0.835HisCys: 0.835 ± 0.908
0.835HisAsp: 0.835 ± 0.614
0.835HisGlu: 0.835 ± 0.646
0.835HisPhe: 0.835 ± 0.614
0.835HisGly: 0.835 ± 0.908
0.835HisHis: 0.835 ± 0.908
0.835HisIle: 0.835 ± 0.614
0.0HisLys: 0.0 ± 0.0
0.835HisLeu: 0.835 ± 0.908
0.0HisMet: 0.0 ± 0.0
0.835HisAsn: 0.835 ± 0.646
2.506HisPro: 2.506 ± 0.494
0.835HisGln: 0.835 ± 0.908
0.835HisArg: 0.835 ± 0.646
0.0HisSer: 0.0 ± 0.0
1.671HisThr: 1.671 ± 0.943
1.671HisVal: 1.671 ± 0.418
0.835HisTrp: 0.835 ± 0.614
0.835HisTyr: 0.835 ± 0.646
0.0HisXaa: 0.0 ± 0.0
Ile
1.671IleAla: 1.671 ± 0.418
1.671IleCys: 1.671 ± 1.228
5.848IleAsp: 5.848 ± 2.306
3.342IleGlu: 3.342 ± 1.509
3.342IlePhe: 3.342 ± 0.725
5.848IleGly: 5.848 ± 1.357
0.0IleHis: 0.0 ± 0.0
2.506IleIle: 2.506 ± 0.899
4.177IleLys: 4.177 ± 1.29
5.848IleLeu: 5.848 ± 1.625
0.835IleMet: 0.835 ± 0.5
6.683IleAsn: 6.683 ± 1.674
5.848IlePro: 5.848 ± 2.398
0.835IleGln: 0.835 ± 0.614
0.835IleArg: 0.835 ± 0.614
3.342IleSer: 3.342 ± 1.398
6.683IleThr: 6.683 ± 2.002
3.342IleVal: 3.342 ± 1.509
0.835IleTrp: 0.835 ± 0.614
0.835IleTyr: 0.835 ± 0.646
0.0IleXaa: 0.0 ± 0.0
Lys
2.506LysAla: 2.506 ± 1.235
0.0LysCys: 0.0 ± 0.0
4.177LysAsp: 4.177 ± 0.116
5.848LysGlu: 5.848 ± 3.461
2.506LysPhe: 2.506 ± 0.829
1.671LysGly: 1.671 ± 0.893
0.0LysHis: 0.0 ± 0.0
3.342LysIle: 3.342 ± 0.837
5.848LysLys: 5.848 ± 2.526
5.013LysLeu: 5.013 ± 2.151
2.506LysMet: 2.506 ± 1.105
2.506LysAsn: 2.506 ± 1.735
4.177LysPro: 4.177 ± 1.161
0.835LysGln: 0.835 ± 0.614
5.013LysArg: 5.013 ± 0.987
5.848LysSer: 5.848 ± 2.281
3.342LysThr: 3.342 ± 0.837
3.342LysVal: 3.342 ± 1.398
0.0LysTrp: 0.0 ± 0.0
2.506LysTyr: 2.506 ± 0.899
0.0LysXaa: 0.0 ± 0.0
Leu
1.671LeuAla: 1.671 ± 1.228
0.0LeuCys: 0.0 ± 0.0
4.177LeuAsp: 4.177 ± 1.29
13.367LeuGlu: 13.367 ± 1.165
6.683LeuPhe: 6.683 ± 2.303
6.683LeuGly: 6.683 ± 0.715
2.506LeuHis: 2.506 ± 1.939
3.342LeuIle: 3.342 ± 0.725
5.848LeuLys: 5.848 ± 1.893
5.013LeuLeu: 5.013 ± 1.457
2.506LeuMet: 2.506 ± 1.735
5.848LeuAsn: 5.848 ± 1.827
5.013LeuPro: 5.013 ± 1.798
4.177LeuGln: 4.177 ± 2.14
1.671LeuArg: 1.671 ± 0.418
2.506LeuSer: 2.506 ± 1.939
5.013LeuThr: 5.013 ± 0.714
2.506LeuVal: 2.506 ± 1.843
0.0LeuTrp: 0.0 ± 0.0
2.506LeuTyr: 2.506 ± 0.829
0.0LeuXaa: 0.0 ± 0.0
Met
0.835MetAla: 0.835 ± 0.614
0.0MetCys: 0.0 ± 0.0
4.177MetAsp: 4.177 ± 1.29
0.0MetGlu: 0.0 ± 0.0
0.835MetPhe: 0.835 ± 0.908
0.0MetGly: 0.0 ± 0.0
0.835MetHis: 0.835 ± 0.908
0.835MetIle: 0.835 ± 0.908
2.506MetLys: 2.506 ± 1.735
0.0MetLeu: 0.0 ± 0.0
0.835MetMet: 0.835 ± 0.614
1.671MetAsn: 1.671 ± 0.893
0.0MetPro: 0.0 ± 0.0
1.671MetGln: 1.671 ± 0.418
0.835MetArg: 0.835 ± 0.646
2.506MetSer: 2.506 ± 0.899
0.835MetThr: 0.835 ± 0.614
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.342AsnAla: 3.342 ± 0.725
2.506AsnCys: 2.506 ± 0.494
0.835AsnAsp: 0.835 ± 0.614
0.835AsnGlu: 0.835 ± 0.908
3.342AsnPhe: 3.342 ± 1.734
2.506AsnGly: 2.506 ± 1.235
0.835AsnHis: 0.835 ± 0.908
5.848AsnIle: 5.848 ± 1.357
4.177AsnLys: 4.177 ± 2.29
2.506AsnLeu: 2.506 ± 1.939
1.671AsnMet: 1.671 ± 0.418
5.848AsnAsn: 5.848 ± 1.12
5.848AsnPro: 5.848 ± 3.419
2.506AsnGln: 2.506 ± 1.235
3.342AsnArg: 3.342 ± 1.786
4.177AsnSer: 4.177 ± 0.116
6.683AsnThr: 6.683 ± 2.796
5.013AsnVal: 5.013 ± 1.457
0.0AsnTrp: 0.0 ± 0.0
4.177AsnTyr: 4.177 ± 1.102
0.0AsnXaa: 0.0 ± 0.0
Pro
2.506ProAla: 2.506 ± 0.899
0.0ProCys: 0.0 ± 0.0
9.19ProAsp: 9.19 ± 1.745
7.519ProGlu: 7.519 ± 1.547
1.671ProPhe: 1.671 ± 1.292
0.835ProGly: 0.835 ± 0.908
0.0ProHis: 0.0 ± 0.0
3.342ProIle: 3.342 ± 1.509
5.013ProLys: 5.013 ± 1.255
9.19ProLeu: 9.19 ± 2.33
0.0ProMet: 0.0 ± 0.0
4.177ProAsn: 4.177 ± 1.161
5.013ProPro: 5.013 ± 0.987
1.671ProGln: 1.671 ± 1.816
3.342ProArg: 3.342 ± 0.837
6.683ProSer: 6.683 ± 0.92
6.683ProThr: 6.683 ± 1.449
2.506ProVal: 2.506 ± 0.899
0.0ProTrp: 0.0 ± 0.0
4.177ProTyr: 4.177 ± 1.102
0.0ProXaa: 0.0 ± 0.0
Gln
0.0GlnAla: 0.0 ± 0.0
0.0GlnCys: 0.0 ± 0.0
0.835GlnAsp: 0.835 ± 0.646
0.0GlnGlu: 0.0 ± 0.0
0.835GlnPhe: 0.835 ± 0.646
0.835GlnGly: 0.835 ± 0.614
0.0GlnHis: 0.0 ± 0.0
1.671GlnIle: 1.671 ± 1.292
1.671GlnLys: 1.671 ± 0.418
4.177GlnLeu: 4.177 ± 1.245
0.835GlnMet: 0.835 ± 0.614
2.506GlnAsn: 2.506 ± 1.235
1.671GlnPro: 1.671 ± 1.228
0.0GlnGln: 0.0 ± 0.0
1.671GlnArg: 1.671 ± 1.228
3.342GlnSer: 3.342 ± 1.4
3.342GlnThr: 3.342 ± 0.837
0.0GlnVal: 0.0 ± 0.0
0.835GlnTrp: 0.835 ± 0.908
5.013GlnTyr: 5.013 ± 0.506
0.0GlnXaa: 0.0 ± 0.0
Arg
1.671ArgAla: 1.671 ± 0.418
0.835ArgCys: 0.835 ± 0.614
0.835ArgAsp: 0.835 ± 0.646
0.0ArgGlu: 0.0 ± 0.0
2.506ArgPhe: 2.506 ± 0.829
3.342ArgGly: 3.342 ± 1.398
1.671ArgHis: 1.671 ± 1.228
3.342ArgIle: 3.342 ± 1.398
5.013ArgLys: 5.013 ± 0.506
4.177ArgLeu: 4.177 ± 0.116
1.671ArgMet: 1.671 ± 0.893
2.506ArgAsn: 2.506 ± 0.494
4.177ArgPro: 4.177 ± 0.116
0.835ArgGln: 0.835 ± 0.614
5.013ArgArg: 5.013 ± 2.778
2.506ArgSer: 2.506 ± 0.494
3.342ArgThr: 3.342 ± 0.837
2.506ArgVal: 2.506 ± 0.899
0.0ArgTrp: 0.0 ± 0.0
1.671ArgTyr: 1.671 ± 0.893
0.0ArgXaa: 0.0 ± 0.0
Ser
4.177SerAla: 4.177 ± 1.102
0.835SerCys: 0.835 ± 0.908
6.683SerAsp: 6.683 ± 1.449
5.848SerGlu: 5.848 ± 1.893
1.671SerPhe: 1.671 ± 0.893
5.848SerGly: 5.848 ± 1.058
1.671SerHis: 1.671 ± 0.418
4.177SerIle: 4.177 ± 2.14
0.0SerLys: 0.0 ± 0.0
7.519SerLeu: 7.519 ± 1.282
0.0SerMet: 0.0 ± 0.69
5.013SerAsn: 5.013 ± 0.506
2.506SerPro: 2.506 ± 0.899
1.671SerGln: 1.671 ± 0.418
1.671SerArg: 1.671 ± 0.418
5.013SerSer: 5.013 ± 1.255
8.354SerThr: 8.354 ± 1.02
3.342SerVal: 3.342 ± 0.837
0.0SerTrp: 0.0 ± 0.0
3.342SerTyr: 3.342 ± 2.604
0.0SerXaa: 0.0 ± 0.0
Thr
0.0ThrAla: 0.0 ± 0.0
4.177ThrCys: 4.177 ± 2.308
2.506ThrAsp: 2.506 ± 0.899
8.354ThrGlu: 8.354 ± 2.185
3.342ThrPhe: 3.342 ± 0.725
9.19ThrGly: 9.19 ± 2.423
0.835ThrHis: 0.835 ± 0.646
10.025ThrIle: 10.025 ± 2.864
5.013ThrLys: 5.013 ± 2.598
5.013ThrLeu: 5.013 ± 2.214
0.0ThrMet: 0.0 ± 0.0
0.835ThrAsn: 0.835 ± 0.908
6.683ThrPro: 6.683 ± 2.562
0.0ThrGln: 0.0 ± 0.0
5.013ThrArg: 5.013 ± 1.255
5.013ThrSer: 5.013 ± 1.658
3.342ThrThr: 3.342 ± 1.398
6.683ThrVal: 6.683 ± 3.017
0.0ThrTrp: 0.0 ± 0.0
1.671ThrTyr: 1.671 ± 1.228
0.0ThrXaa: 0.0 ± 0.0
Val
3.342ValAla: 3.342 ± 0.837
0.0ValCys: 0.0 ± 0.0
3.342ValAsp: 3.342 ± 1.509
2.506ValGlu: 2.506 ± 0.829
2.506ValPhe: 2.506 ± 0.829
2.506ValGly: 2.506 ± 1.843
0.0ValHis: 0.0 ± 0.0
0.835ValIle: 0.835 ± 0.646
2.506ValLys: 2.506 ± 1.338
3.342ValLeu: 3.342 ± 0.837
0.0ValMet: 0.0 ± 0.0
3.342ValAsn: 3.342 ± 0.725
5.013ValPro: 5.013 ± 1.658
2.506ValGln: 2.506 ± 1.939
0.0ValArg: 0.0 ± 0.0
4.177ValSer: 4.177 ± 0.116
4.177ValThr: 4.177 ± 3.231
1.671ValVal: 1.671 ± 1.292
0.835ValTrp: 0.835 ± 0.614
2.506ValTyr: 2.506 ± 0.829
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.835TrpAsp: 0.835 ± 0.614
0.835TrpGlu: 0.835 ± 0.908
0.0TrpPhe: 0.0 ± 0.0
0.835TrpGly: 0.835 ± 0.614
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.835TrpLeu: 0.835 ± 0.614
0.835TrpMet: 0.835 ± 0.646
1.671TrpAsn: 1.671 ± 1.228
0.0TrpPro: 0.0 ± 0.0
1.671TrpGln: 1.671 ± 0.893
0.0TrpArg: 0.0 ± 0.0
2.506TrpSer: 2.506 ± 1.693
0.835TrpThr: 0.835 ± 0.614
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.671TyrAla: 1.671 ± 1.228
0.0TyrCys: 0.0 ± 0.0
0.835TyrAsp: 0.835 ± 0.646
1.671TyrGlu: 1.671 ± 1.816
2.506TyrPhe: 2.506 ± 0.829
4.177TyrGly: 4.177 ± 1.29
0.835TyrHis: 0.835 ± 0.614
0.835TyrIle: 0.835 ± 0.614
2.506TyrLys: 2.506 ± 0.829
5.848TyrLeu: 5.848 ± 1.893
0.835TyrMet: 0.835 ± 0.908
2.506TyrAsn: 2.506 ± 0.494
3.342TyrPro: 3.342 ± 0.837
0.835TyrGln: 0.835 ± 0.614
5.013TyrArg: 5.013 ± 0.987
1.671TyrSer: 1.671 ± 0.418
0.835TyrThr: 0.835 ± 0.614
0.835TyrVal: 0.835 ± 0.646
1.671TyrTrp: 1.671 ± 0.418
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (1198 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski