Plasmodium relictum

Taxonomy: cellular organisms; Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Haemamoeba)

Average proteome isoelectric point is 7.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5136 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1J1H0G9|A0A1J1H0G9_PLARL Protein tyrosine phosphatase putative OS=Plasmodium relictum OX=85471 GN=PTP2 PE=4 SV=1
MM1 pKa = 7.66LISVCISQEE10 pKa = 3.94QEE12 pKa = 3.6GNQYY16 pKa = 10.8LFSEE20 pKa = 5.09EE21 pKa = 3.95ISSNVYY27 pKa = 8.27ITEE30 pKa = 4.1NSPNTGNLIDD40 pKa = 4.64TINIEE45 pKa = 3.88KK46 pKa = 10.88DD47 pKa = 3.32EE48 pKa = 4.3ILDD51 pKa = 3.78LEE53 pKa = 4.96NIPSHH58 pKa = 6.97FPIEE62 pKa = 4.37EE63 pKa = 4.23KK64 pKa = 11.04NSDD67 pKa = 4.09SDD69 pKa = 4.24NKK71 pKa = 11.18DD72 pKa = 3.22DD73 pKa = 4.27FFNMSLVDD81 pKa = 4.11TINLEE86 pKa = 3.95KK87 pKa = 10.83SKK89 pKa = 10.95SYY91 pKa = 10.44DD92 pKa = 3.0IKK94 pKa = 11.3NVLDD98 pKa = 4.02EE99 pKa = 4.52VQCSLMDD106 pKa = 3.88SLIDD110 pKa = 3.54PFYY113 pKa = 10.75PSFKK117 pKa = 10.29SEE119 pKa = 4.18KK120 pKa = 10.26LPIHH124 pKa = 6.84IEE126 pKa = 4.18TEE128 pKa = 4.07PSSLMEE134 pKa = 4.37TKK136 pKa = 9.75DD137 pKa = 3.51TEE139 pKa = 4.14HH140 pKa = 7.03KK141 pKa = 10.96YY142 pKa = 10.83SVEE145 pKa = 4.0LEE147 pKa = 4.25NKK149 pKa = 10.19LGEE152 pKa = 4.51TPSTLPDD159 pKa = 3.54SQTQPSNLPLEE170 pKa = 4.72HH171 pKa = 7.1EE172 pKa = 4.1NSIIYY177 pKa = 10.1IEE179 pKa = 4.4TDD181 pKa = 3.31PPSISLMGTKK191 pKa = 8.62YY192 pKa = 9.19TEE194 pKa = 3.46HH195 pKa = 7.15KK196 pKa = 10.74YY197 pKa = 10.5YY198 pKa = 11.11VEE200 pKa = 4.21LQDD203 pKa = 3.79TLGEE207 pKa = 4.29IPSTLPDD214 pKa = 3.37SQTQSFNLLFEE225 pKa = 4.75HH226 pKa = 7.67DD227 pKa = 3.71YY228 pKa = 11.18AINVTHH234 pKa = 6.75GKK236 pKa = 9.69SFSVNNLMNTEE247 pKa = 3.97NVEE250 pKa = 3.98QEE252 pKa = 4.84DD253 pKa = 4.13PVEE256 pKa = 4.07LQNILDD262 pKa = 4.86EE263 pKa = 4.71ILNTLPDD270 pKa = 4.12SLTEE274 pKa = 4.83PIDD277 pKa = 3.62LLSEE281 pKa = 4.45HH282 pKa = 6.84EE283 pKa = 4.37NSTIHH288 pKa = 7.35AEE290 pKa = 4.11AGPSNISLMGTEE302 pKa = 4.21NEE304 pKa = 4.33KK305 pKa = 11.23HH306 pKa = 5.87NDD308 pKa = 3.34SYY310 pKa = 11.68NPQYY314 pKa = 10.62IFNYY318 pKa = 10.48SLVTPNYY325 pKa = 10.28LKK327 pKa = 11.03EE328 pKa = 4.07EE329 pKa = 4.03FLNLLLEE336 pKa = 4.49DD337 pKa = 3.58QCPSINYY344 pKa = 9.63EE345 pKa = 4.52DD346 pKa = 4.05IFPTTSNLMIPEE358 pKa = 4.0NVEE361 pKa = 3.56DD362 pKa = 3.72EE363 pKa = 4.77EE364 pKa = 4.6YY365 pKa = 10.5IKK367 pKa = 10.97LQIIPVDD374 pKa = 4.08FPIEE378 pKa = 4.1KK379 pKa = 9.74PATTINYY386 pKa = 9.16NEE388 pKa = 4.63DD389 pKa = 3.17MSLLDD394 pKa = 4.95EE395 pKa = 4.93IEE397 pKa = 4.25QISS400 pKa = 3.4

Molecular weight: 45.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1J1HAA7|A0A1J1HAA7_PLARL Calponin homology domain-containing protein putative OS=Plasmodium relictum OX=85471 GN=PRELSG_1233200 PE=4 SV=1
MM1 pKa = 7.28AHH3 pKa = 6.31GASRR7 pKa = 11.84YY8 pKa = 8.75KK9 pKa = 10.48KK10 pKa = 10.3SRR12 pKa = 11.84AKK14 pKa = 9.88MRR16 pKa = 11.84WKK18 pKa = 9.16WKK20 pKa = 9.29KK21 pKa = 9.72KK22 pKa = 6.67RR23 pKa = 11.84TRR25 pKa = 11.84RR26 pKa = 11.84LQKK29 pKa = 9.69KK30 pKa = 7.67RR31 pKa = 11.84RR32 pKa = 11.84KK33 pKa = 8.24MRR35 pKa = 11.84QRR37 pKa = 11.84SRR39 pKa = 3.22

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5136

0

5136

3624278

29

9310

705.7

83.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

1.851 ± 0.02

1.675 ± 0.012

5.483 ± 0.024

7.944 ± 0.044

5.24 ± 0.031

2.315 ± 0.022

1.728 ± 0.009

10.051 ± 0.035

13.073 ± 0.055

8.569 ± 0.03

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.682 ± 0.01

13.802 ± 0.102

1.659 ± 0.019

2.208 ± 0.014

2.54 ± 0.016

7.133 ± 0.029

3.616 ± 0.018

3.388 ± 0.019

0.451 ± 0.008

5.578 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski