Capybara microvirus Cap1_SP_135

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W7Y1|A0A4P8W7Y1_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_135 OX=2585384 PE=4 SV=1
MM1 pKa = 7.6LFNLKK6 pKa = 10.21YY7 pKa = 10.6YY8 pKa = 10.05NKK10 pKa = 10.12CEE12 pKa = 4.21NPDD15 pKa = 3.92FPPLLVPQKK24 pKa = 9.51TIVEE28 pKa = 4.22GSEE31 pKa = 3.61EE32 pKa = 4.59VIFLEE37 pKa = 5.25HH38 pKa = 6.5VPQNDD43 pKa = 4.06FPSDD47 pKa = 3.48MYY49 pKa = 11.39DD50 pKa = 3.52LQNLKK55 pKa = 10.53SAGISPTQFRR65 pKa = 11.84GGSVPSTSRR74 pKa = 11.84LSDD77 pKa = 3.19QSKK80 pKa = 11.05ADD82 pKa = 4.22AIVKK86 pKa = 10.36NIVNALNTQEE96 pKa = 4.57NEE98 pKa = 3.83

Molecular weight: 10.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5D4|A0A4P8W5D4_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_135 OX=2585384 PE=4 SV=1
MM1 pKa = 7.53SEE3 pKa = 4.22ANRR6 pKa = 11.84PLPAAGEE13 pKa = 4.29TQAFFAVRR21 pKa = 11.84VGLPVVHH28 pKa = 6.79RR29 pKa = 11.84KK30 pKa = 9.07KK31 pKa = 10.62RR32 pKa = 11.84QTPKK36 pKa = 10.96YY37 pKa = 10.46LFALCDD43 pKa = 3.55GMRR46 pKa = 11.84TFCEE50 pKa = 4.2LFRR53 pKa = 11.84LEE55 pKa = 5.28LNQSNCDD62 pKa = 3.08ISQKK66 pKa = 7.39TTVLTAVTNKK76 pKa = 10.27

Molecular weight: 8.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1658

76

581

331.6

38.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.031 ± 0.951

1.267 ± 0.422

6.514 ± 0.864

6.092 ± 0.999

5.187 ± 1.362

5.609 ± 0.795

1.628 ± 0.402

5.609 ± 0.764

6.936 ± 0.715

7.961 ± 0.569

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.473 ± 0.405

6.634 ± 0.844

3.739 ± 0.572

5.368 ± 0.933

4.946 ± 0.598

6.454 ± 0.364

5.247 ± 0.731

5.368 ± 0.3

0.905 ± 0.158

6.031 ± 1.229
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski