Torque teno sus virus SH0822/2008

Taxonomy: Viruses; Anelloviridae; Iotatorquevirus; unclassified Iotatorquevirus

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D5K6A1|D5K6A1_9VIRU Capsid protein OS=Torque teno sus virus SH0822/2008 OX=742012 PE=3 SV=1
MM1 pKa = 7.59PEE3 pKa = 3.57HH4 pKa = 6.88WEE6 pKa = 4.15EE7 pKa = 3.82AWLEE11 pKa = 4.1ATKK14 pKa = 10.4GWHH17 pKa = 7.41DD18 pKa = 4.1LDD20 pKa = 4.34CRR22 pKa = 11.84CGNWQDD28 pKa = 4.29HH29 pKa = 5.86LWLLLADD36 pKa = 4.62GDD38 pKa = 4.33AALAAAVDD46 pKa = 4.65AIEE49 pKa = 4.59RR50 pKa = 11.84DD51 pKa = 3.58AMDD54 pKa = 5.12GEE56 pKa = 4.83DD57 pKa = 3.73ATTATDD63 pKa = 3.32RR64 pKa = 11.84VTIGDD69 pKa = 4.33DD70 pKa = 3.11GWW72 pKa = 5.36

Molecular weight: 8.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D5K6A1|D5K6A1_9VIRU Capsid protein OS=Torque teno sus virus SH0822/2008 OX=742012 PE=3 SV=1
MM1 pKa = 7.55AFARR5 pKa = 11.84RR6 pKa = 11.84WRR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84FGRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84YY18 pKa = 8.4RR19 pKa = 11.84KK20 pKa = 9.16RR21 pKa = 11.84RR22 pKa = 11.84YY23 pKa = 7.49GWRR26 pKa = 11.84RR27 pKa = 11.84RR28 pKa = 11.84YY29 pKa = 9.05YY30 pKa = 9.6RR31 pKa = 11.84YY32 pKa = 9.48RR33 pKa = 11.84PRR35 pKa = 11.84YY36 pKa = 7.87YY37 pKa = 9.67RR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84WLVRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84SVYY51 pKa = 9.57RR52 pKa = 11.84RR53 pKa = 11.84GGRR56 pKa = 11.84RR57 pKa = 11.84ARR59 pKa = 11.84PYY61 pKa = 10.18RR62 pKa = 11.84ISAFNPKK69 pKa = 9.02VMRR72 pKa = 11.84KK73 pKa = 8.14VVIRR77 pKa = 11.84GWWPILQCLKK87 pKa = 10.27GQEE90 pKa = 4.22SLRR93 pKa = 11.84YY94 pKa = 9.4RR95 pKa = 11.84PLQWDD100 pKa = 3.67TEE102 pKa = 4.37KK103 pKa = 10.53QWRR106 pKa = 11.84VKK108 pKa = 10.78ADD110 pKa = 3.24YY111 pKa = 10.03EE112 pKa = 4.44DD113 pKa = 3.77NYY115 pKa = 11.1GYY117 pKa = 10.8LVQYY121 pKa = 10.35GGGWGSGEE129 pKa = 3.98VTLEE133 pKa = 3.75GLYY136 pKa = 9.79QEE138 pKa = 4.53HH139 pKa = 6.78LLWRR143 pKa = 11.84NSWSKK148 pKa = 11.58GNDD151 pKa = 2.87GMDD154 pKa = 3.61LVRR157 pKa = 11.84YY158 pKa = 7.43FGCIVYY164 pKa = 9.63LYY166 pKa = 9.39PLQDD170 pKa = 2.88QDD172 pKa = 3.81YY173 pKa = 8.02WFWWDD178 pKa = 3.03TDD180 pKa = 3.83FKK182 pKa = 10.92EE183 pKa = 5.59LYY185 pKa = 10.35AEE187 pKa = 4.46SIKK190 pKa = 10.6EE191 pKa = 3.89YY192 pKa = 9.85SQPSVMMMAKK202 pKa = 8.79RR203 pKa = 11.84TKK205 pKa = 10.53LVIARR210 pKa = 11.84DD211 pKa = 3.8RR212 pKa = 11.84APHH215 pKa = 5.55RR216 pKa = 11.84RR217 pKa = 11.84KK218 pKa = 9.54VRR220 pKa = 11.84KK221 pKa = 9.5IFIPPPSRR229 pKa = 11.84DD230 pKa = 3.08TTQWQFQTDD239 pKa = 3.92FCKK242 pKa = 10.63RR243 pKa = 11.84PLFTWAAGLIDD254 pKa = 3.75MQKK257 pKa = 10.58PFDD260 pKa = 4.05ANGAFRR266 pKa = 11.84NAWWLEE272 pKa = 3.59TRR274 pKa = 11.84NDD276 pKa = 3.67QGEE279 pKa = 4.24MKK281 pKa = 10.59YY282 pKa = 10.05IEE284 pKa = 4.17LWGRR288 pKa = 11.84VPPQGDD294 pKa = 3.53TEE296 pKa = 4.47LPKK299 pKa = 10.82QSDD302 pKa = 3.78FKK304 pKa = 11.38KK305 pKa = 10.9GDD307 pKa = 3.29NNPNYY312 pKa = 10.16NIQEE316 pKa = 4.02GHH318 pKa = 5.77EE319 pKa = 4.15KK320 pKa = 10.17KK321 pKa = 10.11IYY323 pKa = 9.71PIIIYY328 pKa = 10.07VDD330 pKa = 3.23QKK332 pKa = 10.86DD333 pKa = 3.27QKK335 pKa = 8.94TRR337 pKa = 11.84KK338 pKa = 9.19KK339 pKa = 11.05YY340 pKa = 9.24CVCYY344 pKa = 10.77NKK346 pKa = 9.49TLNRR350 pKa = 11.84WRR352 pKa = 11.84KK353 pKa = 8.39AQASTLAIGDD363 pKa = 3.73LQGLVLRR370 pKa = 11.84QLMNQEE376 pKa = 3.38MTYY379 pKa = 9.14YY380 pKa = 8.94WKK382 pKa = 10.71SGEE385 pKa = 4.0FSSPFMQRR393 pKa = 11.84WKK395 pKa = 9.38GTRR398 pKa = 11.84LITIDD403 pKa = 3.28ARR405 pKa = 11.84RR406 pKa = 11.84ADD408 pKa = 3.79TEE410 pKa = 4.14NPKK413 pKa = 10.01VSSWEE418 pKa = 3.64WGQNWNTNGTVLKK431 pKa = 10.4EE432 pKa = 3.89VFNINLTNTQIRR444 pKa = 11.84QDD446 pKa = 3.96DD447 pKa = 4.08FAKK450 pKa = 9.65LTLPKK455 pKa = 10.03SPHH458 pKa = 6.88DD459 pKa = 3.41IDD461 pKa = 4.84FGHH464 pKa = 7.26HH465 pKa = 5.47SRR467 pKa = 11.84FGPFCVKK474 pKa = 10.61NEE476 pKa = 3.84PLEE479 pKa = 4.21FQLRR483 pKa = 11.84APTPTNLWFQYY494 pKa = 10.74KK495 pKa = 10.14FLFQFGGEE503 pKa = 4.14YY504 pKa = 10.2QPPTGIRR511 pKa = 11.84DD512 pKa = 3.68PCIDD516 pKa = 3.55TPAYY520 pKa = 8.19PVPQSGSVTHH530 pKa = 6.54PKK532 pKa = 10.14FAGKK536 pKa = 10.61GGMLTEE542 pKa = 4.16TDD544 pKa = 2.55RR545 pKa = 11.84WGITTASSRR554 pKa = 11.84TLSADD559 pKa = 3.45TPTEE563 pKa = 4.03AAQSALLRR571 pKa = 11.84GDD573 pKa = 3.66AEE575 pKa = 4.5KK576 pKa = 10.68KK577 pKa = 10.56GEE579 pKa = 4.18EE580 pKa = 4.3TEE582 pKa = 4.32EE583 pKa = 4.22TASSSSITSAEE594 pKa = 4.02SSTEE598 pKa = 3.92GDD600 pKa = 3.33GSSDD604 pKa = 3.52DD605 pKa = 3.84EE606 pKa = 4.06EE607 pKa = 4.58TIRR610 pKa = 11.84RR611 pKa = 11.84RR612 pKa = 11.84RR613 pKa = 11.84RR614 pKa = 11.84TWKK617 pKa = 9.54RR618 pKa = 11.84LRR620 pKa = 11.84RR621 pKa = 11.84MVRR624 pKa = 11.84EE625 pKa = 3.76QLDD628 pKa = 2.95RR629 pKa = 11.84RR630 pKa = 11.84MDD632 pKa = 3.46HH633 pKa = 6.39KK634 pKa = 10.63RR635 pKa = 11.84QRR637 pKa = 11.84LHH639 pKa = 6.44

Molecular weight: 76.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

939

72

639

313.0

36.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.496 ± 2.476

1.597 ± 0.557

7.348 ± 2.299

6.177 ± 0.804

2.982 ± 1.226

6.39 ± 0.637

2.236 ± 0.917

3.834 ± 0.301

6.177 ± 0.997

7.242 ± 0.803

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.236 ± 0.115

2.982 ± 0.691

5.325 ± 0.85

5.005 ± 0.822

10.756 ± 1.99

5.431 ± 1.21

6.177 ± 0.21

3.94 ± 0.365

4.26 ± 0.869

3.408 ± 1.761
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski