Tateyamaria sp. ANG-S1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Tateyamaria; unclassified Tateyamaria

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3983 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B4C986|A0A0B4C986_9RHOB Aspartate aminotransferase OS=Tateyamaria sp. ANG-S1 OX=1577905 GN=RA29_13010 PE=3 SV=1
MM1 pKa = 7.2KK2 pKa = 9.99TRR4 pKa = 11.84ILAIGLAAALAGPALAGSLEE24 pKa = 4.26PPAPEE29 pKa = 4.13PAAPAPLPPAPVQSFGGDD47 pKa = 2.96WTGGYY52 pKa = 10.56AGLQLGYY59 pKa = 10.89GDD61 pKa = 4.1VDD63 pKa = 3.58GSGAADD69 pKa = 3.92GDD71 pKa = 4.05DD72 pKa = 4.15FLYY75 pKa = 10.44GAHH78 pKa = 5.98VGYY81 pKa = 10.32RR82 pKa = 11.84YY83 pKa = 10.77DD84 pKa = 3.4FGTFVLGGEE93 pKa = 4.45LDD95 pKa = 3.65YY96 pKa = 11.77DD97 pKa = 4.34FADD100 pKa = 3.63IDD102 pKa = 4.37LNGAASVDD110 pKa = 3.63SVARR114 pKa = 11.84LKK116 pKa = 11.12LQGGYY121 pKa = 11.0DD122 pKa = 3.96FGRR125 pKa = 11.84TLAYY129 pKa = 7.85FTAGLAEE136 pKa = 4.29VDD138 pKa = 3.45TSLGSEE144 pKa = 3.72SGEE147 pKa = 3.95FYY149 pKa = 10.98GIGVAYY155 pKa = 9.72QINDD159 pKa = 3.67RR160 pKa = 11.84YY161 pKa = 8.6TVGAEE166 pKa = 3.99LLDD169 pKa = 4.54HH170 pKa = 6.79NFDD173 pKa = 5.56DD174 pKa = 4.94INGTGVDD181 pKa = 3.93ADD183 pKa = 3.7ATTLTVRR190 pKa = 11.84GSINFF195 pKa = 3.49

Molecular weight: 20.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B4BRS4|A0A0B4BRS4_9RHOB Uncharacterized protein OS=Tateyamaria sp. ANG-S1 OX=1577905 GN=RA29_06115 PE=3 SV=1
MM1 pKa = 7.31QSPGSTTVTLTRR13 pKa = 11.84RR14 pKa = 11.84SASAIAAASPAGPPPAIRR32 pKa = 11.84TSGIRR37 pKa = 11.84PRR39 pKa = 11.84PGPAARR45 pKa = 11.84MSVPQALRR53 pKa = 11.84RR54 pKa = 11.84RR55 pKa = 11.84RR56 pKa = 11.84LWVPRR61 pKa = 11.84VGRR64 pKa = 11.84ALL66 pKa = 3.5

Molecular weight: 6.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3983

0

3983

1214556

35

2088

304.9

33.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.157 ± 0.056

0.871 ± 0.012

6.498 ± 0.044

5.66 ± 0.039

3.804 ± 0.027

8.614 ± 0.046

2.128 ± 0.019

5.216 ± 0.029

3.153 ± 0.035

9.763 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.905 ± 0.023

2.71 ± 0.026

4.98 ± 0.03

3.346 ± 0.021

6.27 ± 0.04

5.029 ± 0.026

5.808 ± 0.033

7.413 ± 0.031

1.434 ± 0.018

2.243 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski