Capybara microvirus Cap3_SP_297

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W4I0|A0A4P8W4I0_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_297 OX=2585424 PE=4 SV=1
MM1 pKa = 7.16TRR3 pKa = 11.84YY4 pKa = 9.31FLYY7 pKa = 10.99LEE9 pKa = 5.26FPRR12 pKa = 11.84EE13 pKa = 4.06MYY15 pKa = 10.77LDD17 pKa = 4.16SPSKK21 pKa = 9.58MRR23 pKa = 11.84KK24 pKa = 9.23LFLDD28 pKa = 3.87FVDD31 pKa = 4.01YY32 pKa = 11.32VRR34 pKa = 11.84LFFINRR40 pKa = 11.84NFYY43 pKa = 10.97SFTIDD48 pKa = 3.4YY49 pKa = 10.14VRR51 pKa = 11.84EE52 pKa = 4.31LILVDD57 pKa = 4.08VNSSRR62 pKa = 11.84YY63 pKa = 10.25DD64 pKa = 3.5EE65 pKa = 4.41VDD67 pKa = 3.23SLLGEE72 pKa = 4.53LEE74 pKa = 4.56DD75 pKa = 5.49SISTTKK81 pKa = 10.2FDD83 pKa = 3.09SYY85 pKa = 11.71YY86 pKa = 11.19SVFF89 pKa = 3.46

Molecular weight: 10.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4S1|A0A4P8W4S1_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_297 OX=2585424 PE=4 SV=1
MM1 pKa = 7.96SILNLLNFFSKK12 pKa = 10.54FKK14 pKa = 10.65PFLKK18 pKa = 9.95KK19 pKa = 10.56VYY21 pKa = 10.4SFTPLVLSVIAIFISLSCLRR41 pKa = 11.84VSRR44 pKa = 11.84SALEE48 pKa = 4.15KK49 pKa = 10.34SSHH52 pKa = 5.58AVEE55 pKa = 4.02ICSNYY60 pKa = 10.37SSDD63 pKa = 3.06ISSLVDD69 pKa = 3.24EE70 pKa = 4.49VRR72 pKa = 11.84KK73 pKa = 7.51MTEE76 pKa = 3.89TIEE79 pKa = 4.5NRR81 pKa = 11.84LDD83 pKa = 3.57EE84 pKa = 4.33QNEE87 pKa = 4.28MLSHH91 pKa = 7.07IYY93 pKa = 10.39GDD95 pKa = 4.01YY96 pKa = 10.67FISIYY101 pKa = 11.23GNGNKK106 pKa = 9.24VDD108 pKa = 3.79GKK110 pKa = 10.68NFGKK114 pKa = 9.3TSKK117 pKa = 10.58KK118 pKa = 10.52

Molecular weight: 13.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1973

89

784

394.6

44.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.815 ± 1.142

1.368 ± 0.47

6.842 ± 0.322

4.105 ± 0.473

7.805 ± 0.797

4.866 ± 0.715

1.926 ± 0.604

6.133 ± 0.375

4.764 ± 1.001

8.92 ± 0.497

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.484 ± 0.269

6.386 ± 0.461

4.257 ± 0.73

2.636 ± 0.659

4.308 ± 0.329

11.809 ± 0.926

4.967 ± 0.416

5.981 ± 0.433

0.456 ± 0.084

5.17 ± 0.476
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski