TM7 phylum sp. oral taxon 352

Taxonomy: cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 703 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A563CM93|A0A563CM93_9BACT Uncharacterized protein OS=TM7 phylum sp. oral taxon 352 OX=713054 GN=EUA74_03565 PE=4 SV=1
MM1 pKa = 7.44NSNNTSLGISLRR13 pKa = 11.84TMVFTISACAVFVLTLGTTIGAIVCSTALLVAAQALTIPLGWVYY57 pKa = 10.47FSSTGKK63 pKa = 10.16IPTVALKK70 pKa = 9.04VTAILGTVVYY80 pKa = 10.29VALLASNIDD89 pKa = 3.6TLITDD94 pKa = 3.72WGDD97 pKa = 2.85LTTAFNVVIDD107 pKa = 4.07GEE109 pKa = 4.66GWADD113 pKa = 3.4ALAFTLFMCTLPVVTAVIAPVPPEE137 pKa = 4.01RR138 pKa = 11.84DD139 pKa = 3.2DD140 pKa = 4.01YY141 pKa = 12.29GNDD144 pKa = 4.16DD145 pKa = 3.69EE146 pKa = 5.91DD147 pKa = 3.67

Molecular weight: 15.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A563CB94|A0A563CB94_9BACT Single-stranded-DNA-specific exonuclease RecJ OS=TM7 phylum sp. oral taxon 352 OX=713054 GN=recJ PE=3 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.06RR4 pKa = 11.84TFQPHH9 pKa = 4.1TRR11 pKa = 11.84HH12 pKa = 5.99RR13 pKa = 11.84AKK15 pKa = 9.66THH17 pKa = 5.06GFRR20 pKa = 11.84ARR22 pKa = 11.84VSTKK26 pKa = 9.98AGRR29 pKa = 11.84MVLKK33 pKa = 10.41RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84LKK38 pKa = 10.74GRR40 pKa = 11.84AKK42 pKa = 10.19IAII45 pKa = 4.11

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

703

0

703

207660

14

1277

295.4

32.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.164 ± 0.098

0.645 ± 0.027

5.958 ± 0.082

6.502 ± 0.102

3.798 ± 0.062

6.789 ± 0.084

1.7 ± 0.037

7.368 ± 0.082

7.005 ± 0.109

9.153 ± 0.107

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.414 ± 0.039

4.591 ± 0.061

3.781 ± 0.058

3.603 ± 0.056

5.107 ± 0.071

6.671 ± 0.086

5.435 ± 0.067

7.112 ± 0.082

1.048 ± 0.04

3.155 ± 0.057
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski