Rubrivivax albus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiales genera incertae sedis; Rubrivivax

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4847 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A437JZI6|A0A437JZI6_9BURK RND transporter OS=Rubrivivax albus OX=2499835 GN=ENE75_00575 PE=4 SV=1
MM1 pKa = 7.3FKK3 pKa = 10.55SIAAAAVLAATAIAPASSAHH23 pKa = 6.43ALTMGDD29 pKa = 2.84IAFTGFNADD38 pKa = 2.97QDD40 pKa = 3.78NWSVVALADD49 pKa = 3.51IAPGTEE55 pKa = 4.37IYY57 pKa = 10.71FSDD60 pKa = 4.1NEE62 pKa = 4.34WNGTAFNDD70 pKa = 4.34TNEE73 pKa = 4.16HH74 pKa = 4.72TMLWNSGAATIAAGTVVLFTEE95 pKa = 5.02ISSSNFGVSVGNLSLASGGGSNFGLSASDD124 pKa = 3.41EE125 pKa = 4.19TLYY128 pKa = 10.99AYY130 pKa = 10.82LGTDD134 pKa = 2.89AVTPTLFLAGFSTEE148 pKa = 4.09SGTGNLTAAGLTLGATAVQVTNSADD173 pKa = 3.31YY174 pKa = 11.17AEE176 pKa = 4.54YY177 pKa = 10.56VGPRR181 pKa = 11.84LGQATFGAYY190 pKa = 10.36AMLVNDD196 pKa = 4.05ASSWNVLVGGDD207 pKa = 3.66QSALVPDD214 pKa = 4.38TTAFSVTAVPEE225 pKa = 4.41PGTYY229 pKa = 11.26AMLLSGLLAIGTFVRR244 pKa = 11.84RR245 pKa = 11.84KK246 pKa = 9.49GG247 pKa = 3.4

Molecular weight: 25.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A437JYJ7|A0A437JYJ7_9BURK Uncharacterized protein OS=Rubrivivax albus OX=2499835 GN=ENE75_10100 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.25QPSKK9 pKa = 7.79TRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.79GFLVRR21 pKa = 11.84MKK23 pKa = 9.7TRR25 pKa = 11.84GGRR28 pKa = 11.84AVIKK32 pKa = 10.36ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.91GRR39 pKa = 11.84KK40 pKa = 8.86RR41 pKa = 11.84LAA43 pKa = 3.57

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4847

0

4847

1628097

37

5221

335.9

36.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.363 ± 0.054

0.896 ± 0.012

5.649 ± 0.028

4.897 ± 0.032

3.219 ± 0.019

8.755 ± 0.047

2.355 ± 0.018

3.53 ± 0.025

2.384 ± 0.032

11.033 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.267 ± 0.018

2.033 ± 0.023

5.754 ± 0.026

3.793 ± 0.024

7.839 ± 0.041

4.601 ± 0.034

5.146 ± 0.033

7.902 ± 0.033

1.683 ± 0.017

1.903 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski