Vibrio phage V07

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; Schizotequatrovirus; unclassified Schizotequatrovirus

Average proteome isoelectric point is 6.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 516 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6H0X7Z2|A0A6H0X7Z2_9CAUD Uncharacterized protein OS=Vibrio phage V07 OX=2724326 GN=GCAPEGMB_00164 PE=4 SV=1
MM1 pKa = 7.6IVLQHH6 pKa = 5.85EE7 pKa = 4.25TDD9 pKa = 3.84GYY11 pKa = 10.16IVQIGCDD18 pKa = 3.35ICCTPDD24 pKa = 2.95IDD26 pKa = 3.94KK27 pKa = 11.35ASMFEE32 pKa = 4.36TVGVAQEE39 pKa = 5.99FKK41 pKa = 10.83DD42 pKa = 5.27QWDD45 pKa = 3.41LWDD48 pKa = 3.46WEE50 pKa = 4.2VRR52 pKa = 11.84EE53 pKa = 4.16VGLL56 pKa = 4.91

Molecular weight: 6.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6H0X8K6|A0A6H0X8K6_9CAUD DNA_LIGASE_A3 domain-containing protein OS=Vibrio phage V07 OX=2724326 GN=GCAPEGMB_00417 PE=4 SV=1
MM1 pKa = 7.41FMRR4 pKa = 11.84GSLEE8 pKa = 3.89HH9 pKa = 7.4DD10 pKa = 3.81VFCTIVTLNRR20 pKa = 11.84FTYY23 pKa = 10.6SEE25 pKa = 4.61LSCNMGVSSARR36 pKa = 11.84IRR38 pKa = 11.84RR39 pKa = 11.84AIKK42 pKa = 9.63SLRR45 pKa = 11.84QKK47 pKa = 10.89GVLIQTTGGGKK58 pKa = 10.08GSGMEE63 pKa = 3.65QEE65 pKa = 5.11RR66 pKa = 11.84FLEE69 pKa = 4.52YY70 pKa = 10.13KK71 pKa = 10.43GHH73 pKa = 7.22LPPKK77 pKa = 9.45QKK79 pKa = 10.36RR80 pKa = 11.84GLHH83 pKa = 5.77GNPNN87 pKa = 3.44

Molecular weight: 9.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

516

0

516

105896

41

1256

205.2

23.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.437 ± 0.139

1.195 ± 0.06

6.606 ± 0.101

7.374 ± 0.13

4.127 ± 0.076

6.432 ± 0.134

2.257 ± 0.063

6.217 ± 0.094

6.616 ± 0.13

7.527 ± 0.112

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.814 ± 0.077

5.107 ± 0.083

3.413 ± 0.081

3.628 ± 0.109

4.927 ± 0.076

5.869 ± 0.119

6.09 ± 0.152

6.876 ± 0.093

1.46 ± 0.045

4.029 ± 0.09
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski