Cohnella sp. AR92

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella; unclassified Cohnella

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5378 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S0YPN6|A0A3S0YPN6_9BACL Cell wall-active antibiotics response protein OS=Cohnella sp. AR92 OX=648716 GN=ELR57_19485 PE=4 SV=1
MM1 pKa = 7.26SVVVCPWCQSEE12 pKa = 4.4IPQEE16 pKa = 4.17EE17 pKa = 4.45GQEE20 pKa = 4.04PEE22 pKa = 4.7KK23 pKa = 10.99YY24 pKa = 10.52CPVCEE29 pKa = 4.38NEE31 pKa = 3.65LDD33 pKa = 3.74GYY35 pKa = 8.82RR36 pKa = 11.84TLRR39 pKa = 11.84IGLGDD44 pKa = 4.19EE45 pKa = 4.89DD46 pKa = 6.29DD47 pKa = 4.08SDD49 pKa = 4.11EE50 pKa = 5.58DD51 pKa = 4.96FEE53 pKa = 6.2EE54 pKa = 6.46DD55 pKa = 4.82DD56 pKa = 5.41DD57 pKa = 5.94DD58 pKa = 5.12SSSYY62 pKa = 11.13GAILTDD68 pKa = 3.49EE69 pKa = 4.39EE70 pKa = 5.35DD71 pKa = 3.28ISFEE75 pKa = 4.11QDD77 pKa = 2.12EE78 pKa = 4.41DD79 pKa = 4.07LQVKK83 pKa = 10.26NEE85 pKa = 3.82ALMQYY90 pKa = 10.24EE91 pKa = 4.21EE92 pKa = 4.47TVEE95 pKa = 4.19KK96 pKa = 10.8LLDD99 pKa = 3.75EE100 pKa = 4.37QEE102 pKa = 4.61TVPEE106 pKa = 4.47CPQCRR111 pKa = 11.84EE112 pKa = 3.9YY113 pKa = 10.56MLEE116 pKa = 4.12AGEE119 pKa = 4.48TTVPAAGFLARR130 pKa = 11.84VPEE133 pKa = 4.26SLGAPILEE141 pKa = 4.85APYY144 pKa = 10.78SMKK147 pKa = 10.62VYY149 pKa = 10.32VCPSCFQVQHH159 pKa = 6.19SLSDD163 pKa = 3.19EE164 pKa = 3.96HH165 pKa = 6.51RR166 pKa = 11.84TILIQKK172 pKa = 9.01LAANRR177 pKa = 11.84ARR179 pKa = 4.04

Molecular weight: 20.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A433RMJ5|A0A433RMJ5_9BACL Zinc ribbon domain-containing protein OS=Cohnella sp. AR92 OX=648716 GN=ELR57_01050 PE=4 SV=1
MM1 pKa = 7.61GPTFKK6 pKa = 10.87PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.57KK14 pKa = 8.17VHH16 pKa = 5.5GFRR19 pKa = 11.84SRR21 pKa = 11.84MSSKK25 pKa = 10.58NGRR28 pKa = 11.84KK29 pKa = 8.51VLKK32 pKa = 10.34ARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.21GRR39 pKa = 11.84KK40 pKa = 8.56VLSAA44 pKa = 4.05

Molecular weight: 5.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5378

0

5378

1738542

26

2988

323.3

35.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.134 ± 0.04

0.701 ± 0.01

5.194 ± 0.026

6.896 ± 0.038

3.96 ± 0.024

7.821 ± 0.033

1.87 ± 0.016

6.109 ± 0.027

4.957 ± 0.031

10.26 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.57 ± 0.017

3.552 ± 0.026

4.216 ± 0.021

3.418 ± 0.02

5.843 ± 0.042

6.651 ± 0.033

5.176 ± 0.032

6.998 ± 0.03

1.34 ± 0.014

3.332 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski