Gammapapillomavirus 25

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2AMD9|A0A2D2AMD9_9PAPI Minor capsid protein L2 OS=Gammapapillomavirus 25 OX=1961682 GN=L2 PE=3 SV=1
MM1 pKa = 7.67IGPSPNNDD9 pKa = 4.03DD10 pKa = 5.03IEE12 pKa = 6.57LDD14 pKa = 3.5LHH16 pKa = 7.27DD17 pKa = 5.77LVLPSNLISEE27 pKa = 4.91EE28 pKa = 4.12SLSPDD33 pKa = 2.79VDD35 pKa = 3.83PEE37 pKa = 4.19EE38 pKa = 5.06EE39 pKa = 4.16EE40 pKa = 3.95QLPFAVEE47 pKa = 4.53TSCKK51 pKa = 10.04SCGAGVRR58 pKa = 11.84FTVCATHH65 pKa = 6.78AAIRR69 pKa = 11.84TLQILLLQEE78 pKa = 4.58LSLICLRR85 pKa = 11.84CSRR88 pKa = 11.84SLIQHH93 pKa = 6.13GRR95 pKa = 11.84PHH97 pKa = 6.63

Molecular weight: 10.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2AMB7|A0A2D2AMB7_9PAPI E4 OS=Gammapapillomavirus 25 OX=1961682 GN=E4 PE=4 SV=1
MM1 pKa = 7.0NQADD5 pKa = 3.68LTARR9 pKa = 11.84FDD11 pKa = 3.97ALQEE15 pKa = 4.17TLMTLYY21 pKa = 10.29EE22 pKa = 4.17RR23 pKa = 11.84NARR26 pKa = 11.84DD27 pKa = 3.6LEE29 pKa = 4.26SQILHH34 pKa = 6.42WEE36 pKa = 4.49TVRR39 pKa = 11.84KK40 pKa = 9.93QYY42 pKa = 9.59VTMYY46 pKa = 9.06YY47 pKa = 10.43ARR49 pKa = 11.84KK50 pKa = 9.55EE51 pKa = 4.26GFRR54 pKa = 11.84SLGMQPLPALTVSEE68 pKa = 4.51YY69 pKa = 10.11KK70 pKa = 10.66AKK72 pKa = 10.74EE73 pKa = 4.35GIQMVLLLRR82 pKa = 11.84SLQKK86 pKa = 10.62SEE88 pKa = 4.43FATEE92 pKa = 3.87DD93 pKa = 2.73WTLIDD98 pKa = 3.6TSAEE102 pKa = 4.0LLHH105 pKa = 6.36TPPKK109 pKa = 10.58NCFKK113 pKa = 10.85KK114 pKa = 10.39GGYY117 pKa = 6.19TVEE120 pKa = 4.35VYY122 pKa = 10.61FDD124 pKa = 4.13EE125 pKa = 5.66NPDD128 pKa = 3.42NVFPYY133 pKa = 9.85TNWDD137 pKa = 4.19FIYY140 pKa = 11.08YY141 pKa = 9.94QDD143 pKa = 5.04TNEE146 pKa = 4.34KK147 pKa = 6.92WHH149 pKa = 6.06KK150 pKa = 8.62TAGLVDD156 pKa = 3.78YY157 pKa = 10.94DD158 pKa = 3.5GMYY161 pKa = 10.32FQEE164 pKa = 4.53PNGDD168 pKa = 2.88RR169 pKa = 11.84TYY171 pKa = 11.1FQLFEE176 pKa = 5.05KK177 pKa = 10.74DD178 pKa = 2.96ALRR181 pKa = 11.84YY182 pKa = 9.87GSTGRR187 pKa = 11.84WSVQYY192 pKa = 10.6KK193 pKa = 9.66NQTILPSASVSSSTRR208 pKa = 11.84RR209 pKa = 11.84SVDD212 pKa = 3.18EE213 pKa = 4.24PDD215 pKa = 3.5EE216 pKa = 4.37ARR218 pKa = 11.84SGPSTYY224 pKa = 10.23PSTPPQISSRR234 pKa = 11.84RR235 pKa = 11.84SEE237 pKa = 4.03TEE239 pKa = 3.17EE240 pKa = 4.03RR241 pKa = 11.84GLVSSTLQTPPQTSGEE257 pKa = 3.97VRR259 pKa = 11.84LRR261 pKa = 11.84RR262 pKa = 11.84RR263 pKa = 11.84RR264 pKa = 11.84GKK266 pKa = 10.28GEE268 pKa = 3.55RR269 pKa = 11.84TTRR272 pKa = 11.84KK273 pKa = 9.76SPTKK277 pKa = 10.09RR278 pKa = 11.84RR279 pKa = 11.84RR280 pKa = 11.84TDD282 pKa = 3.15EE283 pKa = 3.92TDD285 pKa = 3.36SPGLEE290 pKa = 4.0SVPSPEE296 pKa = 4.55AVGTRR301 pKa = 11.84HH302 pKa = 5.32RR303 pKa = 11.84TVPSTGLSRR312 pKa = 11.84LRR314 pKa = 11.84RR315 pKa = 11.84LQIEE319 pKa = 4.16ARR321 pKa = 11.84DD322 pKa = 3.76PPAIIVTGPANSLKK336 pKa = 9.9CWRR339 pKa = 11.84WRR341 pKa = 11.84LKK343 pKa = 10.51KK344 pKa = 10.35YY345 pKa = 9.53SRR347 pKa = 11.84YY348 pKa = 7.16YY349 pKa = 11.49ARR351 pKa = 11.84MSTVWSWAGEE361 pKa = 4.25VCPKK365 pKa = 10.26ASKK368 pKa = 10.84NRR370 pKa = 11.84MLIAFTDD377 pKa = 3.56EE378 pKa = 4.15TQRR381 pKa = 11.84SVFLKK386 pKa = 10.6LVSLPKK392 pKa = 9.39HH393 pKa = 4.47TTYY396 pKa = 11.56GLAQLGILL404 pKa = 4.22

Molecular weight: 46.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2424

97

603

346.3

39.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.992 ± 0.394

2.228 ± 0.804

6.436 ± 0.512

6.436 ± 0.256

4.579 ± 0.446

5.817 ± 0.775

1.733 ± 0.307

4.909 ± 0.688

5.652 ± 0.813

9.323 ± 0.673

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.898 ± 0.51

4.497 ± 0.658

6.353 ± 1.047

4.084 ± 0.408

5.487 ± 0.869

7.88 ± 0.428

6.518 ± 0.897

5.817 ± 0.37

1.238 ± 0.314

4.125 ± 0.533
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski