Paracoccus aestuariivivens

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4256 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6L6J9Z4|A0A6L6J9Z4_9RHOB Glycosyltransferase OS=Paracoccus aestuariivivens OX=1820333 GN=GL286_13940 PE=4 SV=1
MM1 pKa = 8.23RR2 pKa = 11.84DD3 pKa = 3.23TSVPSSDD10 pKa = 4.96FMNDD14 pKa = 2.98PQTDD18 pKa = 3.68QSVSTSRR25 pKa = 11.84AIRR28 pKa = 11.84TEE30 pKa = 3.73TSDD33 pKa = 3.46ADD35 pKa = 3.7SGISTRR41 pKa = 11.84YY42 pKa = 7.35TMNVGDD48 pKa = 4.01TFVGNLATYY57 pKa = 10.75SDD59 pKa = 4.32NDD61 pKa = 3.62WVRR64 pKa = 11.84VTLTAGTYY72 pKa = 9.95EE73 pKa = 4.01IDD75 pKa = 3.61LAGSGSSPVRR85 pKa = 11.84DD86 pKa = 3.59TYY88 pKa = 11.56LRR90 pKa = 11.84IYY92 pKa = 10.31DD93 pKa = 3.62ATGTLVTYY101 pKa = 10.86NDD103 pKa = 4.47DD104 pKa = 4.56GGDD107 pKa = 3.66GLNSHH112 pKa = 7.29LSLTVTQPGTYY123 pKa = 8.9YY124 pKa = 10.66VSAGAFSSSYY134 pKa = 9.18TGSYY138 pKa = 9.63SLNVSRR144 pKa = 11.84GAEE147 pKa = 3.73PTVFTIAQIAAQLTDD162 pKa = 4.78GYY164 pKa = 10.33WDD166 pKa = 3.3STDD169 pKa = 3.11RR170 pKa = 11.84GRR172 pKa = 11.84RR173 pKa = 11.84SFDD176 pKa = 3.16VSPGEE181 pKa = 4.26TINVDD186 pKa = 4.47LSGLDD191 pKa = 3.17ADD193 pKa = 4.29GRR195 pKa = 11.84RR196 pKa = 11.84LAVAALAAWTDD207 pKa = 3.33VSGIRR212 pKa = 11.84FNSVNPYY219 pKa = 10.08SGQTVHH225 pKa = 5.99ITFGDD230 pKa = 3.94DD231 pKa = 3.89EE232 pKa = 5.21SGAWSSSTTSGGEE245 pKa = 3.46IWSSDD250 pKa = 3.62VNVGRR255 pKa = 11.84DD256 pKa = 2.94WLDD259 pKa = 3.12TYY261 pKa = 11.0GTGFATYY268 pKa = 10.01SYY270 pKa = 8.93QTYY273 pKa = 9.13IHH275 pKa = 7.16EE276 pKa = 4.71IGHH279 pKa = 6.42ALGLGHH285 pKa = 7.58AGNYY289 pKa = 9.08NGSAVYY295 pKa = 8.45GTDD298 pKa = 2.7NTYY301 pKa = 10.85INDD304 pKa = 3.2SWQASVMSYY313 pKa = 10.02FSQDD317 pKa = 2.89DD318 pKa = 3.73NTFVNASYY326 pKa = 10.46AYY328 pKa = 10.68VMSAMAADD336 pKa = 3.75IAAIQEE342 pKa = 4.32LYY344 pKa = 11.18GRR346 pKa = 11.84TTLRR350 pKa = 11.84AGNTVYY356 pKa = 11.06GEE358 pKa = 3.96NSNAGGNYY366 pKa = 9.51GRR368 pKa = 11.84ISSILATGARR378 pKa = 11.84DD379 pKa = 4.28DD380 pKa = 3.58IAFTIVDD387 pKa = 3.88SQGVDD392 pKa = 3.32TLNLSGDD399 pKa = 3.77TANQRR404 pKa = 11.84IIMTPGGISNAYY416 pKa = 9.39GITGNIIITSGTVIEE431 pKa = 4.23NLRR434 pKa = 11.84AGSGNDD440 pKa = 3.45YY441 pKa = 11.04LSGNAAHH448 pKa = 5.85NTIWGNAGNDD458 pKa = 3.7MIIGGLGNDD467 pKa = 3.95TLLGGAGRR475 pKa = 11.84DD476 pKa = 3.65TLNGGNGNDD485 pKa = 3.8IYY487 pKa = 11.03HH488 pKa = 7.48ADD490 pKa = 3.54GFDD493 pKa = 3.99IISEE497 pKa = 4.18GSNGGVDD504 pKa = 3.56TVYY507 pKa = 11.17SSGNFALTPNLEE519 pKa = 3.99NLYY522 pKa = 9.16LTGSAQTGTGNVAANTIVGNAQGNTLRR549 pKa = 11.84GMGGNDD555 pKa = 3.42ILNGAAGSDD564 pKa = 3.76TMHH567 pKa = 6.91GGAGNDD573 pKa = 3.51TYY575 pKa = 11.08HH576 pKa = 7.32IDD578 pKa = 3.53SQDD581 pKa = 3.45RR582 pKa = 11.84LVEE585 pKa = 3.98LANEE589 pKa = 4.96GIDD592 pKa = 3.65TVVSAASFTLAANFEE607 pKa = 4.29NLRR610 pKa = 11.84LTGSAVFGTGNDD622 pKa = 3.49AANTIVGNSLGNTIRR637 pKa = 11.84GMAGNDD643 pKa = 3.07ILNGGGGNDD652 pKa = 3.1RR653 pKa = 11.84LFGGTHH659 pKa = 6.95ADD661 pKa = 3.34TFVFGSGQDD670 pKa = 3.26MVMDD674 pKa = 4.08FQNNIDD680 pKa = 3.84TLRR683 pKa = 11.84IDD685 pKa = 3.54DD686 pKa = 4.63ALWGGGARR694 pKa = 11.84TVGQVLSLATVINGDD709 pKa = 3.85TVFLFGNGNRR719 pKa = 11.84LTIDD723 pKa = 2.97NYY725 pKa = 10.85TNINSLSDD733 pKa = 3.65DD734 pKa = 3.84LVIII738 pKa = 4.8

Molecular weight: 77.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6L6J370|A0A6L6J370_9RHOB Uncharacterized protein OS=Paracoccus aestuariivivens OX=1820333 GN=GL286_02455 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84ARR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.37GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.12GGRR29 pKa = 11.84RR30 pKa = 11.84VLNARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.0GRR40 pKa = 11.84KK41 pKa = 8.91SLSAA45 pKa = 3.86

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4256

0

4256

1347648

29

2777

316.6

34.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.279 ± 0.04

0.815 ± 0.012

5.81 ± 0.032

5.605 ± 0.036

3.63 ± 0.025

8.667 ± 0.038

2.067 ± 0.019

5.494 ± 0.028

2.991 ± 0.03

10.331 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.786 ± 0.017

2.624 ± 0.02

5.229 ± 0.027

3.304 ± 0.021

6.992 ± 0.043

5.428 ± 0.027

5.282 ± 0.024

7.097 ± 0.025

1.431 ± 0.015

2.138 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski