Planococcus sp. Y42

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planococcus

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3921 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Q2L493|A0A1Q2L493_9BACL Uncharacterized protein OS=Planococcus sp. Y42 OX=2213202 GN=B0X71_18840 PE=4 SV=1
MM1 pKa = 7.37KK2 pKa = 10.62KK3 pKa = 10.49KK4 pKa = 10.17MNLFLLLSTAIMMVGCTDD22 pKa = 3.5AEE24 pKa = 4.21EE25 pKa = 4.3SAVAGEE31 pKa = 4.27EE32 pKa = 4.27TVSQEE37 pKa = 3.74VAEE40 pKa = 4.81AEE42 pKa = 4.09TEE44 pKa = 4.37EE45 pKa = 4.48ISEE48 pKa = 4.15QAEE51 pKa = 4.0TDD53 pKa = 3.48TAVADD58 pKa = 3.94EE59 pKa = 4.93TEE61 pKa = 4.6TEE63 pKa = 3.95ASPEE67 pKa = 4.0EE68 pKa = 4.29SSEE71 pKa = 4.36AEE73 pKa = 3.85AAPSDD78 pKa = 4.39VEE80 pKa = 4.32SAPAQPEE87 pKa = 3.91EE88 pKa = 4.35APFPGYY94 pKa = 10.39EE95 pKa = 4.68LITVDD100 pKa = 5.04GGDD103 pKa = 3.07LSGYY107 pKa = 9.69RR108 pKa = 11.84EE109 pKa = 4.27PNVVVDD115 pKa = 3.08VGYY118 pKa = 10.95GEE120 pKa = 4.04RR121 pKa = 11.84EE122 pKa = 3.6YY123 pKa = 10.44WAFTNEE129 pKa = 3.58YY130 pKa = 8.34GQLVRR135 pKa = 11.84VVADD139 pKa = 4.42EE140 pKa = 6.08IIPQDD145 pKa = 4.07DD146 pKa = 3.47NSEE149 pKa = 4.07PVTADD154 pKa = 2.51GRR156 pKa = 11.84YY157 pKa = 9.03YY158 pKa = 9.98PDD160 pKa = 3.36EE161 pKa = 4.51AKK163 pKa = 11.02VPGVEE168 pKa = 4.89SDD170 pKa = 3.86VLDD173 pKa = 4.46EE174 pKa = 4.33GHH176 pKa = 7.0VIADD180 pKa = 3.72SLGGVANAYY189 pKa = 10.48NITPQDD195 pKa = 3.29STLNRR200 pKa = 11.84HH201 pKa = 5.53GDD203 pKa = 3.34QAYY206 pKa = 8.73MEE208 pKa = 4.63DD209 pKa = 4.09VIRR212 pKa = 11.84DD213 pKa = 3.58AGGATHH219 pKa = 7.12FEE221 pKa = 4.53AIITYY226 pKa = 9.59PNTEE230 pKa = 3.85TQIPSRR236 pKa = 11.84YY237 pKa = 8.33QYY239 pKa = 10.59TYY241 pKa = 9.06TVMGNEE247 pKa = 4.51VVDD250 pKa = 3.48TFNNVNPDD258 pKa = 3.54EE259 pKa = 4.54VNEE262 pKa = 4.18SLGLTEE268 pKa = 5.35NEE270 pKa = 4.05PAEE273 pKa = 4.35PADD276 pKa = 3.58TDD278 pKa = 3.78TAHH281 pKa = 7.23DD282 pKa = 4.03VSSVDD287 pKa = 3.51TNGNGQVTIKK297 pKa = 9.56EE298 pKa = 3.92AKK300 pKa = 9.66AAGFSMPIMSDD311 pKa = 2.56HH312 pKa = 6.56WLYY315 pKa = 10.53PYY317 pKa = 9.86MQDD320 pKa = 3.21NDD322 pKa = 3.64KK323 pKa = 11.57DD324 pKa = 4.13GMVGEE329 pKa = 4.54

Molecular weight: 35.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Q2KVC1|A0A1Q2KVC1_9BACL Uncharacterized protein OS=Planococcus sp. Y42 OX=2213202 GN=B0X71_02645 PE=4 SV=1
MM1 pKa = 7.34FFHH4 pKa = 6.8NRR6 pKa = 11.84TASAAKK12 pKa = 9.62ARR14 pKa = 11.84RR15 pKa = 11.84IKK17 pKa = 9.97TSAPAPLRR25 pKa = 11.84LLVANSSGKK34 pKa = 10.16AVAAAVRR41 pKa = 11.84WLPPFHH47 pKa = 7.1SRR49 pKa = 11.84QLKK52 pKa = 6.71MTTRR56 pKa = 11.84QNAA59 pKa = 3.02

Molecular weight: 6.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3921

0

3921

1117653

25

1528

285.0

31.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.656 ± 0.045

0.62 ± 0.01

5.32 ± 0.031

8.04 ± 0.05

4.481 ± 0.026

7.267 ± 0.037

2.05 ± 0.018

6.715 ± 0.036

5.463 ± 0.042

9.896 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.682 ± 0.018

3.657 ± 0.026

3.933 ± 0.027

3.771 ± 0.025

4.892 ± 0.03

5.598 ± 0.026

5.557 ± 0.025

7.088 ± 0.036

1.062 ± 0.014

3.253 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski