Amino acid dipepetide frequency for Wenzhou picorna-like virus 47

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.662AlaAla: 2.662 ± 0.0
1.141AlaCys: 1.141 ± 0.0
2.662AlaAsp: 2.662 ± 0.0
2.281AlaGlu: 2.281 ± 0.0
4.183AlaPhe: 4.183 ± 0.0
2.662AlaGly: 2.662 ± 0.0
1.141AlaHis: 1.141 ± 0.0
3.802AlaIle: 3.802 ± 0.0
3.422AlaLys: 3.422 ± 0.0
3.422AlaLeu: 3.422 ± 0.0
2.662AlaMet: 2.662 ± 0.0
2.662AlaAsn: 2.662 ± 0.0
3.802AlaPro: 3.802 ± 0.0
3.042AlaGln: 3.042 ± 0.0
2.662AlaArg: 2.662 ± 0.0
5.703AlaSer: 5.703 ± 0.0
2.281AlaThr: 2.281 ± 0.0
5.323AlaVal: 5.323 ± 0.0
0.0AlaTrp: 0.0 ± 0.0
2.281AlaTyr: 2.281 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.141CysAla: 1.141 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.141CysAsp: 1.141 ± 0.0
1.901CysGlu: 1.901 ± 0.0
1.521CysPhe: 1.521 ± 0.0
0.76CysGly: 0.76 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.38CysIle: 0.38 ± 0.0
0.76CysLys: 0.76 ± 0.0
4.183CysLeu: 4.183 ± 0.0
0.38CysMet: 0.38 ± 0.0
0.76CysAsn: 0.76 ± 0.0
1.141CysPro: 1.141 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.38CysArg: 0.38 ± 0.0
0.38CysSer: 0.38 ± 0.0
0.76CysThr: 0.76 ± 0.0
1.521CysVal: 1.521 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.38CysTyr: 0.38 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.901AspAla: 1.901 ± 0.0
0.76AspCys: 0.76 ± 0.0
4.943AspAsp: 4.943 ± 0.0
3.802AspGlu: 3.802 ± 0.0
3.802AspPhe: 3.802 ± 0.0
1.901AspGly: 1.901 ± 0.0
1.141AspHis: 1.141 ± 0.0
4.563AspIle: 4.563 ± 0.0
3.802AspLys: 3.802 ± 0.0
4.943AspLeu: 4.943 ± 0.0
2.662AspMet: 2.662 ± 0.0
1.901AspAsn: 1.901 ± 0.0
3.422AspPro: 3.422 ± 0.0
3.802AspGln: 3.802 ± 0.0
1.901AspArg: 1.901 ± 0.0
5.703AspSer: 5.703 ± 0.0
1.141AspThr: 1.141 ± 0.0
3.802AspVal: 3.802 ± 0.0
0.76AspTrp: 0.76 ± 0.0
1.901AspTyr: 1.901 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
5.323GluAla: 5.323 ± 0.0
1.901GluCys: 1.901 ± 0.0
5.323GluAsp: 5.323 ± 0.0
4.183GluGlu: 4.183 ± 0.0
2.662GluPhe: 2.662 ± 0.0
4.563GluGly: 4.563 ± 0.0
1.141GluHis: 1.141 ± 0.0
3.422GluIle: 3.422 ± 0.0
4.183GluLys: 4.183 ± 0.0
6.084GluLeu: 6.084 ± 0.0
0.38GluMet: 0.38 ± 0.0
5.323GluAsn: 5.323 ± 0.0
0.76GluPro: 0.76 ± 0.0
4.183GluGln: 4.183 ± 0.0
2.281GluArg: 2.281 ± 0.0
4.943GluSer: 4.943 ± 0.0
4.943GluThr: 4.943 ± 0.0
2.662GluVal: 2.662 ± 0.0
0.76GluTrp: 0.76 ± 0.0
2.662GluTyr: 2.662 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.662PheAla: 2.662 ± 0.0
0.76PheCys: 0.76 ± 0.0
1.901PheAsp: 1.901 ± 0.0
6.464PheGlu: 6.464 ± 0.0
1.521PhePhe: 1.521 ± 0.0
4.183PheGly: 4.183 ± 0.0
1.141PheHis: 1.141 ± 0.0
3.802PheIle: 3.802 ± 0.0
5.323PheLys: 5.323 ± 0.0
3.802PheLeu: 3.802 ± 0.0
1.521PheMet: 1.521 ± 0.0
2.662PheAsn: 2.662 ± 0.0
2.662PhePro: 2.662 ± 0.0
1.901PheGln: 1.901 ± 0.0
1.141PheArg: 1.141 ± 0.0
3.802PheSer: 3.802 ± 0.0
1.521PheThr: 1.521 ± 0.0
3.042PheVal: 3.042 ± 0.0
0.38PheTrp: 0.38 ± 0.0
1.521PheTyr: 1.521 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.662GlyAla: 2.662 ± 0.0
0.76GlyCys: 0.76 ± 0.0
1.901GlyAsp: 1.901 ± 0.0
3.802GlyGlu: 3.802 ± 0.0
4.183GlyPhe: 4.183 ± 0.0
1.521GlyGly: 1.521 ± 0.0
0.76GlyHis: 0.76 ± 0.0
3.042GlyIle: 3.042 ± 0.0
4.943GlyLys: 4.943 ± 0.0
3.802GlyLeu: 3.802 ± 0.0
1.141GlyMet: 1.141 ± 0.0
3.802GlyAsn: 3.802 ± 0.0
1.521GlyPro: 1.521 ± 0.0
2.662GlyGln: 2.662 ± 0.0
3.802GlyArg: 3.802 ± 0.0
3.422GlySer: 3.422 ± 0.0
4.563GlyThr: 4.563 ± 0.0
3.042GlyVal: 3.042 ± 0.0
0.76GlyTrp: 0.76 ± 0.0
1.141GlyTyr: 1.141 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.141HisAla: 1.141 ± 0.0
0.76HisCys: 0.76 ± 0.0
0.76HisAsp: 0.76 ± 0.0
1.141HisGlu: 1.141 ± 0.0
0.76HisPhe: 0.76 ± 0.0
2.662HisGly: 2.662 ± 0.0
0.0HisHis: 0.0 ± 0.0
0.38HisIle: 0.38 ± 0.0
0.76HisLys: 0.76 ± 0.0
1.901HisLeu: 1.901 ± 0.0
0.38HisMet: 0.38 ± 0.0
0.0HisAsn: 0.0 ± 0.0
1.901HisPro: 1.901 ± 0.0
0.0HisGln: 0.0 ± 0.0
0.76HisArg: 0.76 ± 0.0
0.0HisSer: 0.0 ± 0.0
1.521HisThr: 1.521 ± 0.0
1.141HisVal: 1.141 ± 0.0
0.0HisTrp: 0.0 ± 0.0
1.521HisTyr: 1.521 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.802IleAla: 3.802 ± 0.0
1.141IleCys: 1.141 ± 0.0
4.563IleAsp: 4.563 ± 0.0
6.844IleGlu: 6.844 ± 0.0
2.662IlePhe: 2.662 ± 0.0
6.464IleGly: 6.464 ± 0.0
1.141IleHis: 1.141 ± 0.0
3.042IleIle: 3.042 ± 0.0
4.563IleLys: 4.563 ± 0.0
4.943IleLeu: 4.943 ± 0.0
1.521IleMet: 1.521 ± 0.0
3.042IleAsn: 3.042 ± 0.0
3.042IlePro: 3.042 ± 0.0
1.141IleGln: 1.141 ± 0.0
1.521IleArg: 1.521 ± 0.0
3.802IleSer: 3.802 ± 0.0
4.183IleThr: 4.183 ± 0.0
2.281IleVal: 2.281 ± 0.0
1.141IleTrp: 1.141 ± 0.0
3.802IleTyr: 3.802 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
4.183LysAla: 4.183 ± 0.0
0.76LysCys: 0.76 ± 0.0
4.563LysAsp: 4.563 ± 0.0
3.802LysGlu: 3.802 ± 0.0
1.901LysPhe: 1.901 ± 0.0
1.521LysGly: 1.521 ± 0.0
1.141LysHis: 1.141 ± 0.0
6.464LysIle: 6.464 ± 0.0
5.323LysLys: 5.323 ± 0.0
4.183LysLeu: 4.183 ± 0.0
3.042LysMet: 3.042 ± 0.0
5.703LysAsn: 5.703 ± 0.0
2.281LysPro: 2.281 ± 0.0
3.802LysGln: 3.802 ± 0.0
6.084LysArg: 6.084 ± 0.0
3.802LysSer: 3.802 ± 0.0
6.844LysThr: 6.844 ± 0.0
3.422LysVal: 3.422 ± 0.0
0.76LysTrp: 0.76 ± 0.0
5.703LysTyr: 5.703 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
3.802LeuAla: 3.802 ± 0.0
0.76LeuCys: 0.76 ± 0.0
4.183LeuAsp: 4.183 ± 0.0
3.042LeuGlu: 3.042 ± 0.0
3.042LeuPhe: 3.042 ± 0.0
4.563LeuGly: 4.563 ± 0.0
1.901LeuHis: 1.901 ± 0.0
6.464LeuIle: 6.464 ± 0.0
5.703LeuLys: 5.703 ± 0.0
6.464LeuLeu: 6.464 ± 0.0
1.901LeuMet: 1.901 ± 0.0
4.563LeuAsn: 4.563 ± 0.0
4.943LeuPro: 4.943 ± 0.0
3.422LeuGln: 3.422 ± 0.0
4.943LeuArg: 4.943 ± 0.0
6.084LeuSer: 6.084 ± 0.0
3.422LeuThr: 3.422 ± 0.0
5.323LeuVal: 5.323 ± 0.0
0.76LeuTrp: 0.76 ± 0.0
2.662LeuTyr: 2.662 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.521MetAla: 1.521 ± 0.0
1.521MetCys: 1.521 ± 0.0
2.662MetAsp: 2.662 ± 0.0
1.521MetGlu: 1.521 ± 0.0
1.141MetPhe: 1.141 ± 0.0
0.76MetGly: 0.76 ± 0.0
0.76MetHis: 0.76 ± 0.0
2.662MetIle: 2.662 ± 0.0
1.521MetLys: 1.521 ± 0.0
2.662MetLeu: 2.662 ± 0.0
1.521MetMet: 1.521 ± 0.0
0.38MetAsn: 0.38 ± 0.0
1.141MetPro: 1.141 ± 0.0
0.76MetGln: 0.76 ± 0.0
1.521MetArg: 1.521 ± 0.0
1.901MetSer: 1.901 ± 0.0
1.141MetThr: 1.141 ± 0.0
1.141MetVal: 1.141 ± 0.0
0.38MetTrp: 0.38 ± 0.0
1.141MetTyr: 1.141 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
4.563AsnAla: 4.563 ± 0.0
0.76AsnCys: 0.76 ± 0.0
3.422AsnAsp: 3.422 ± 0.0
3.422AsnGlu: 3.422 ± 0.0
3.042AsnPhe: 3.042 ± 0.0
3.422AsnGly: 3.422 ± 0.0
0.76AsnHis: 0.76 ± 0.0
1.141AsnIle: 1.141 ± 0.0
4.943AsnLys: 4.943 ± 0.0
3.422AsnLeu: 3.422 ± 0.0
0.76AsnMet: 0.76 ± 0.0
0.76AsnAsn: 0.76 ± 0.0
2.662AsnPro: 2.662 ± 0.0
2.281AsnGln: 2.281 ± 0.0
4.943AsnArg: 4.943 ± 0.0
2.281AsnSer: 2.281 ± 0.0
2.662AsnThr: 2.662 ± 0.0
4.563AsnVal: 4.563 ± 0.0
0.38AsnTrp: 0.38 ± 0.0
1.521AsnTyr: 1.521 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.662ProAla: 2.662 ± 0.0
0.76ProCys: 0.76 ± 0.0
1.521ProAsp: 1.521 ± 0.0
2.662ProGlu: 2.662 ± 0.0
1.141ProPhe: 1.141 ± 0.0
2.662ProGly: 2.662 ± 0.0
0.38ProHis: 0.38 ± 0.0
3.042ProIle: 3.042 ± 0.0
3.042ProLys: 3.042 ± 0.0
3.422ProLeu: 3.422 ± 0.0
1.901ProMet: 1.901 ± 0.0
1.901ProAsn: 1.901 ± 0.0
3.422ProPro: 3.422 ± 0.0
1.141ProGln: 1.141 ± 0.0
3.042ProArg: 3.042 ± 0.0
3.802ProSer: 3.802 ± 0.0
3.422ProThr: 3.422 ± 0.0
2.662ProVal: 2.662 ± 0.0
0.38ProTrp: 0.38 ± 0.0
1.141ProTyr: 1.141 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.042GlnAla: 3.042 ± 0.0
0.0GlnCys: 0.0 ± 0.0
0.38GlnAsp: 0.38 ± 0.0
2.662GlnGlu: 2.662 ± 0.0
1.901GlnPhe: 1.901 ± 0.0
1.141GlnGly: 1.141 ± 0.0
1.141GlnHis: 1.141 ± 0.0
4.183GlnIle: 4.183 ± 0.0
2.662GlnLys: 2.662 ± 0.0
2.281GlnLeu: 2.281 ± 0.0
1.141GlnMet: 1.141 ± 0.0
4.183GlnAsn: 4.183 ± 0.0
1.901GlnPro: 1.901 ± 0.0
2.281GlnGln: 2.281 ± 0.0
1.141GlnArg: 1.141 ± 0.0
3.422GlnSer: 3.422 ± 0.0
3.042GlnThr: 3.042 ± 0.0
1.901GlnVal: 1.901 ± 0.0
0.38GlnTrp: 0.38 ± 0.0
1.521GlnTyr: 1.521 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
1.901ArgAla: 1.901 ± 0.0
0.76ArgCys: 0.76 ± 0.0
3.042ArgAsp: 3.042 ± 0.0
2.281ArgGlu: 2.281 ± 0.0
3.422ArgPhe: 3.422 ± 0.0
2.281ArgGly: 2.281 ± 0.0
0.38ArgHis: 0.38 ± 0.0
3.422ArgIle: 3.422 ± 0.0
4.183ArgLys: 4.183 ± 0.0
3.042ArgLeu: 3.042 ± 0.0
0.38ArgMet: 0.38 ± 0.0
2.281ArgAsn: 2.281 ± 0.0
1.521ArgPro: 1.521 ± 0.0
0.76ArgGln: 0.76 ± 0.0
4.183ArgArg: 4.183 ± 0.0
1.901ArgSer: 1.901 ± 0.0
4.563ArgThr: 4.563 ± 0.0
2.662ArgVal: 2.662 ± 0.0
1.141ArgTrp: 1.141 ± 0.0
5.703ArgTyr: 5.703 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
6.084SerAla: 6.084 ± 0.0
1.141SerCys: 1.141 ± 0.0
5.703SerAsp: 5.703 ± 0.0
3.802SerGlu: 3.802 ± 0.0
4.563SerPhe: 4.563 ± 0.0
4.183SerGly: 4.183 ± 0.0
0.76SerHis: 0.76 ± 0.0
3.042SerIle: 3.042 ± 0.0
3.042SerLys: 3.042 ± 0.0
6.464SerLeu: 6.464 ± 0.0
0.76SerMet: 0.76 ± 0.0
3.422SerAsn: 3.422 ± 0.0
2.281SerPro: 2.281 ± 0.0
3.422SerGln: 3.422 ± 0.0
1.521SerArg: 1.521 ± 0.0
1.901SerSer: 1.901 ± 0.0
5.703SerThr: 5.703 ± 0.0
3.422SerVal: 3.422 ± 0.0
0.0SerTrp: 0.0 ± 0.0
3.802SerTyr: 3.802 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.422ThrAla: 3.422 ± 0.0
0.76ThrCys: 0.76 ± 0.0
3.422ThrAsp: 3.422 ± 0.0
4.183ThrGlu: 4.183 ± 0.0
2.281ThrPhe: 2.281 ± 0.0
3.042ThrGly: 3.042 ± 0.0
0.38ThrHis: 0.38 ± 0.0
5.323ThrIle: 5.323 ± 0.0
6.464ThrLys: 6.464 ± 0.0
2.662ThrLeu: 2.662 ± 0.0
1.901ThrMet: 1.901 ± 0.0
3.042ThrAsn: 3.042 ± 0.0
2.662ThrPro: 2.662 ± 0.0
1.141ThrGln: 1.141 ± 0.0
3.422ThrArg: 3.422 ± 0.0
6.084ThrSer: 6.084 ± 0.0
2.281ThrThr: 2.281 ± 0.0
4.183ThrVal: 4.183 ± 0.0
1.521ThrTrp: 1.521 ± 0.0
3.422ThrTyr: 3.422 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
2.281ValAla: 2.281 ± 0.0
1.521ValCys: 1.521 ± 0.0
4.183ValAsp: 4.183 ± 0.0
3.422ValGlu: 3.422 ± 0.0
4.563ValPhe: 4.563 ± 0.0
1.901ValGly: 1.901 ± 0.0
1.141ValHis: 1.141 ± 0.0
2.662ValIle: 2.662 ± 0.0
6.084ValLys: 6.084 ± 0.0
4.943ValLeu: 4.943 ± 0.0
2.281ValMet: 2.281 ± 0.0
1.901ValAsn: 1.901 ± 0.0
2.281ValPro: 2.281 ± 0.0
2.281ValGln: 2.281 ± 0.0
2.662ValArg: 2.662 ± 0.0
2.662ValSer: 2.662 ± 0.0
6.464ValThr: 6.464 ± 0.0
3.802ValVal: 3.802 ± 0.0
0.38ValTrp: 0.38 ± 0.0
2.662ValTyr: 2.662 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.38TrpAla: 0.38 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.38TrpAsp: 0.38 ± 0.0
1.141TrpGlu: 1.141 ± 0.0
1.141TrpPhe: 1.141 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.38TrpHis: 0.38 ± 0.0
0.76TrpIle: 0.76 ± 0.0
0.76TrpLys: 0.76 ± 0.0
0.76TrpLeu: 0.76 ± 0.0
0.76TrpMet: 0.76 ± 0.0
0.38TrpAsn: 0.38 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.38TrpGln: 0.38 ± 0.0
0.0TrpArg: 0.0 ± 0.0
0.0TrpSer: 0.0 ± 0.0
0.76TrpThr: 0.76 ± 0.0
1.521TrpVal: 1.521 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.76TrpTyr: 0.76 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.662TyrAla: 2.662 ± 0.0
1.521TyrCys: 1.521 ± 0.0
1.901TyrAsp: 1.901 ± 0.0
5.323TyrGlu: 5.323 ± 0.0
2.281TyrPhe: 2.281 ± 0.0
3.042TyrGly: 3.042 ± 0.0
1.901TyrHis: 1.901 ± 0.0
3.042TyrIle: 3.042 ± 0.0
3.802TyrLys: 3.802 ± 0.0
4.563TyrLeu: 4.563 ± 0.0
0.38TyrMet: 0.38 ± 0.0
3.042TyrAsn: 3.042 ± 0.0
0.76TyrPro: 0.76 ± 0.0
1.901TyrGln: 1.901 ± 0.0
1.901TyrArg: 1.901 ± 0.0
3.422TyrSer: 3.422 ± 0.0
0.76TyrThr: 0.76 ± 0.0
2.662TyrVal: 2.662 ± 0.0
0.38TyrTrp: 0.38 ± 0.0
2.281TyrTyr: 2.281 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2631 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski