Sporocytophaga myxococcoides

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae;

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5042 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A098LE06|A0A098LE06_9BACT Putative phosphoesterase OS=Sporocytophaga myxococcoides OX=153721 GN=MYP_1556 PE=4 SV=1
MM1 pKa = 7.55LMKK4 pKa = 10.54YY5 pKa = 10.33LLGLIIVLGLGFNSFAQTPQDD26 pKa = 3.77EE27 pKa = 4.41QNEE30 pKa = 4.33DD31 pKa = 3.46SFICYY36 pKa = 9.51QVDD39 pKa = 3.67EE40 pKa = 4.85NSISCYY46 pKa = 10.2SDD48 pKa = 3.2YY49 pKa = 11.56DD50 pKa = 3.67PAFDD54 pKa = 3.46EE55 pKa = 4.64TFQQGVTPEE64 pKa = 3.71GDD66 pKa = 2.83IYY68 pKa = 11.62SMEE71 pKa = 4.17EE72 pKa = 3.98NIIEE76 pKa = 4.79SPGQEE81 pKa = 3.67EE82 pKa = 4.07NASEE86 pKa = 3.98EE87 pKa = 4.49FYY89 pKa = 10.71RR90 pKa = 11.84IEE92 pKa = 4.1PLEE95 pKa = 4.18LEE97 pKa = 4.29GTPQCEE103 pKa = 4.02ANEE106 pKa = 4.1KK107 pKa = 10.58EE108 pKa = 3.96EE109 pKa = 3.95AKK111 pKa = 10.53AYY113 pKa = 9.09NRR115 pKa = 11.84PEE117 pKa = 3.88NYY119 pKa = 9.43EE120 pKa = 4.07DD121 pKa = 4.83KK122 pKa = 11.09SNEE125 pKa = 4.38DD126 pKa = 2.84ISQIGDD132 pKa = 3.28QEE134 pKa = 4.4RR135 pKa = 11.84GEE137 pKa = 4.08NTVNSEE143 pKa = 3.53ICSQLEE149 pKa = 3.9RR150 pKa = 11.84SDD152 pKa = 3.35GKK154 pKa = 11.33SFGEE158 pKa = 4.18PYY160 pKa = 10.71DD161 pKa = 3.76FEE163 pKa = 5.07KK164 pKa = 10.69AQCYY168 pKa = 9.24CPDD171 pKa = 3.67MEE173 pKa = 4.63TTTEE177 pKa = 3.78GDD179 pKa = 3.9YY180 pKa = 11.42KK181 pKa = 10.82FGNPDD186 pKa = 3.28EE187 pKa = 5.11EE188 pKa = 4.52INPEE192 pKa = 4.01DD193 pKa = 3.46VHH195 pKa = 8.9IEE197 pKa = 4.39TNVSTDD203 pKa = 2.63EE204 pKa = 4.3GGIYY208 pKa = 10.37

Molecular weight: 23.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A098LJG5|A0A098LJG5_9BACT ATE_C domain-containing protein OS=Sporocytophaga myxococcoides OX=153721 GN=MYP_3854 PE=4 SV=1
MM1 pKa = 7.41GRR3 pKa = 11.84TFLRR7 pKa = 11.84IVFIRR12 pKa = 11.84AHH14 pKa = 6.31FKK16 pKa = 10.7LPTRR20 pKa = 11.84HH21 pKa = 6.6PYY23 pKa = 8.53HH24 pKa = 6.92ARR26 pKa = 11.84MWFIINQIRR35 pKa = 11.84FIRR38 pKa = 11.84ANSNIFHH45 pKa = 7.0RR46 pKa = 11.84HH47 pKa = 4.08AQLL50 pKa = 3.62

Molecular weight: 6.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5042

0

5042

1718912

50

5647

340.9

38.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.149 ± 0.034

0.904 ± 0.014

5.271 ± 0.021

6.393 ± 0.043

5.206 ± 0.03

6.704 ± 0.037

1.668 ± 0.015

8.058 ± 0.038

7.891 ± 0.042

9.227 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.058 ± 0.014

5.999 ± 0.034

3.653 ± 0.025

3.123 ± 0.019

3.539 ± 0.028

7.175 ± 0.034

5.553 ± 0.049

6.122 ± 0.029

1.063 ± 0.011

4.243 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski