Spodoptera frugiperda rhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betapaprhavirus; Frugiperda betapaprhavirus

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X2KYE6|X2KYE6_9RHAB Uncharacterized protein OS=Spodoptera frugiperda rhabdovirus OX=1481139 PE=4 SV=1
MM1 pKa = 7.01TQGTMKK7 pKa = 10.35PVWEE11 pKa = 4.04EE12 pKa = 3.76LGTGEE17 pKa = 4.96TEE19 pKa = 4.07FQGTVDD25 pKa = 3.0IPGRR29 pKa = 11.84SLKK32 pKa = 10.25PEE34 pKa = 3.87KK35 pKa = 9.96TDD37 pKa = 3.12WSVDD41 pKa = 3.2TCRR44 pKa = 11.84EE45 pKa = 3.23ISLNLKK51 pKa = 10.35LPGEE55 pKa = 4.61IWQLAHH61 pKa = 6.75QEE63 pKa = 4.4TIFNRR68 pKa = 11.84FLTFYY73 pKa = 10.09ATGYY77 pKa = 9.71VPNTHH82 pKa = 6.43TATEE86 pKa = 4.42IVLSMASLIFKK97 pKa = 10.25DD98 pKa = 3.65KK99 pKa = 11.13AKK101 pKa = 11.04APIDD105 pKa = 4.83LIWDD109 pKa = 3.85DD110 pKa = 4.55SFQASPSEE118 pKa = 4.02EE119 pKa = 4.07CGFSVVGEE127 pKa = 4.3TPLVIGQHH135 pKa = 6.76PDD137 pKa = 3.19DD138 pKa = 5.56DD139 pKa = 5.84DD140 pKa = 3.75YY141 pKa = 11.95TLRR144 pKa = 11.84EE145 pKa = 4.33DD146 pKa = 4.02EE147 pKa = 4.92EE148 pKa = 4.45SAAMNEE154 pKa = 4.12EE155 pKa = 4.17EE156 pKa = 5.28KK157 pKa = 10.73IQAALKK163 pKa = 9.35TLGIQDD169 pKa = 3.94TPVDD173 pKa = 4.26LKK175 pKa = 10.9DD176 pKa = 3.17ASGIVFEE183 pKa = 4.49TKK185 pKa = 9.46EE186 pKa = 4.19DD187 pKa = 3.51RR188 pKa = 11.84EE189 pKa = 3.94QRR191 pKa = 11.84IKK193 pKa = 11.05NEE195 pKa = 3.93KK196 pKa = 9.19ALHH199 pKa = 5.75VEE201 pKa = 4.02DD202 pKa = 6.23DD203 pKa = 3.94INALTQITKK212 pKa = 10.25QFLFEE217 pKa = 4.23YY218 pKa = 9.73STGSLQKK225 pKa = 10.07FVAKK229 pKa = 9.37ATTIFIDD236 pKa = 3.61NNATNGFTRR245 pKa = 11.84LHH247 pKa = 5.53LHH249 pKa = 7.77AIRR252 pKa = 11.84VMNFIALTMLRR263 pKa = 11.84KK264 pKa = 8.3VTKK267 pKa = 10.66SNAQMINAFLKK278 pKa = 9.84EE279 pKa = 3.9QYY281 pKa = 9.71KK282 pKa = 10.83RR283 pKa = 11.84NIASLIPGALSSDD296 pKa = 4.31FAPPSKK302 pKa = 10.86SCIDD306 pKa = 3.43KK307 pKa = 9.33LTAISKK313 pKa = 10.11NDD315 pKa = 3.75PAVSSFFAKK324 pKa = 9.71VVMLNMEE331 pKa = 4.31EE332 pKa = 4.31EE333 pKa = 4.14RR334 pKa = 11.84RR335 pKa = 11.84NPSLVACLGASLLTHH350 pKa = 5.76TTWNGMGILHH360 pKa = 6.71VIFEE364 pKa = 4.72VCLFHH369 pKa = 7.16QISWKK374 pKa = 10.38RR375 pKa = 11.84LVTEE379 pKa = 4.6SLTSLTKK386 pKa = 9.91MSWGEE391 pKa = 3.72VSQFLIKK398 pKa = 10.57YY399 pKa = 6.17QAKK402 pKa = 9.88GNPDD406 pKa = 3.3PTVAWARR413 pKa = 11.84IIDD416 pKa = 3.74DD417 pKa = 4.15SYY419 pKa = 11.8FMRR422 pKa = 11.84LTIVNHH428 pKa = 5.63PTLAALLVEE437 pKa = 4.3SLIRR441 pKa = 11.84SQKK444 pKa = 10.92DD445 pKa = 3.27DD446 pKa = 4.72GILNANWAIQHH457 pKa = 6.93RR458 pKa = 11.84DD459 pKa = 3.18TINYY463 pKa = 8.66YY464 pKa = 10.39RR465 pKa = 11.84DD466 pKa = 3.34AAKK469 pKa = 10.85LLTDD473 pKa = 3.79KK474 pKa = 10.65LTGQTATVQALTNEE488 pKa = 4.17AADD491 pKa = 4.38LVRR494 pKa = 11.84TMNAGPSRR502 pKa = 11.84YY503 pKa = 9.04HH504 pKa = 6.42PRR506 pKa = 11.84PSTLIPMVDD515 pKa = 4.65LNPEE519 pKa = 4.09DD520 pKa = 3.63LL521 pKa = 4.71

Molecular weight: 58.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X2L5J8|X2L5J8_9RHAB P OS=Spodoptera frugiperda rhabdovirus OX=1481139 PE=4 SV=1
MM1 pKa = 7.43SALEE5 pKa = 4.23RR6 pKa = 11.84IARR9 pKa = 11.84SLSLKK14 pKa = 9.99KK15 pKa = 10.44LNPRR19 pKa = 11.84RR20 pKa = 11.84TPKK23 pKa = 8.86TQPIPEE29 pKa = 4.5KK30 pKa = 9.55ATVYY34 pKa = 10.45HH35 pKa = 7.05PFMLSYY41 pKa = 10.97DD42 pKa = 3.87LNLAIEE48 pKa = 4.47GKK50 pKa = 9.42IHH52 pKa = 6.75ISAITIIVNALSLAWAIEE70 pKa = 4.1LFHH73 pKa = 7.5SDD75 pKa = 4.12SSWSGCLEE83 pKa = 4.09YY84 pKa = 10.28FWKK87 pKa = 10.57SIKK90 pKa = 10.64DD91 pKa = 3.7NILASINPRR100 pKa = 11.84VDD102 pKa = 3.48PNGTCHH108 pKa = 6.2MMTSIITFLGFSDD121 pKa = 4.9GSCINSEE128 pKa = 4.12AEE130 pKa = 3.84PRR132 pKa = 11.84QLTGSRR138 pKa = 11.84SWEE141 pKa = 3.63IMSPNQNLIVITLGFKK157 pKa = 8.95ITLKK161 pKa = 10.11TFAQHH166 pKa = 5.18QRR168 pKa = 11.84YY169 pKa = 8.97SLRR172 pKa = 11.84DD173 pKa = 3.4HH174 pKa = 6.93GFHH177 pKa = 6.83KK178 pKa = 11.08LEE180 pKa = 3.99MLNEE184 pKa = 4.15KK185 pKa = 8.95EE186 pKa = 4.65KK187 pKa = 11.37KK188 pKa = 7.62MLNYY192 pKa = 9.91MGVKK196 pKa = 8.96QLKK199 pKa = 8.38PQYY202 pKa = 7.38THH204 pKa = 6.55EE205 pKa = 4.23KK206 pKa = 8.95TFEE209 pKa = 3.81KK210 pKa = 10.8LILKK214 pKa = 10.22NKK216 pKa = 8.39GPKK219 pKa = 9.36GSRR222 pKa = 11.84VRR224 pKa = 11.84AILHH228 pKa = 4.88SQSRR232 pKa = 11.84DD233 pKa = 2.95MWSPTAPSPPPTYY246 pKa = 10.53EE247 pKa = 5.03DD248 pKa = 3.88GSSDD252 pKa = 3.88EE253 pKa = 4.23WDD255 pKa = 3.42QQQLHH260 pKa = 6.22SLNHH264 pKa = 5.73LHH266 pKa = 6.15TPSVPLRR273 pKa = 11.84APRR276 pKa = 11.84TSPPQQLSPKK286 pKa = 8.23PTSTTQPLPQLTQPNKK302 pKa = 9.45PQEE305 pKa = 3.96LSKK308 pKa = 11.34

Molecular weight: 34.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

4069

109

2140

678.2

77.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.596 ± 1.018

1.425 ± 0.195

5.087 ± 0.481

5.235 ± 0.322

4.375 ± 0.603

4.792 ± 0.391

2.875 ± 0.175

6.906 ± 0.586

5.628 ± 0.274

11.969 ± 1.087

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.015 ± 0.284

4.989 ± 0.194

5.825 ± 0.453

4.178 ± 0.296

4.841 ± 0.32

8.675 ± 0.72

6.267 ± 0.753

5.48 ± 0.493

1.597 ± 0.254

3.244 ± 0.402
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski