Umboniibacter marinipuniceus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Cellvibrionales; Cellvibrionaceae; Umboniibacter

Average proteome isoelectric point is 5.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2413 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3M0A976|A0A3M0A976_9GAMM Glycerate dehydrogenase OS=Umboniibacter marinipuniceus OX=569599 GN=DFR27_1405 PE=3 SV=1
MM1 pKa = 7.34EE2 pKa = 5.86RR3 pKa = 11.84SLDD6 pKa = 3.56SRR8 pKa = 11.84LVIVSALLALTMSAVTSAQDD28 pKa = 3.7SEE30 pKa = 4.65IEE32 pKa = 4.23SSAVAAQSEE41 pKa = 5.08STTEE45 pKa = 4.05TEE47 pKa = 4.26AEE49 pKa = 4.25LPAVTYY55 pKa = 9.81EE56 pKa = 4.41SYY58 pKa = 11.2GSDD61 pKa = 2.82VGFVQTQPVPYY72 pKa = 10.22DD73 pKa = 3.57GDD75 pKa = 3.66PFEE78 pKa = 5.06DD79 pKa = 3.9LNRR82 pKa = 11.84AMLTFNDD89 pKa = 3.32VADD92 pKa = 5.14RR93 pKa = 11.84YY94 pKa = 10.54LLLPIVTGYY103 pKa = 11.05KK104 pKa = 10.39YY105 pKa = 9.27ITPDD109 pKa = 3.23PVEE112 pKa = 4.34RR113 pKa = 11.84SVDD116 pKa = 3.65NIFANLDD123 pKa = 4.28DD124 pKa = 4.86IGSAANSILQLKK136 pKa = 9.88IGDD139 pKa = 3.74AGVYY143 pKa = 10.03AGRR146 pKa = 11.84FLTNTTIGVLGIWDD160 pKa = 3.78VASEE164 pKa = 3.98LGMRR168 pKa = 11.84RR169 pKa = 11.84LEE171 pKa = 4.52GEE173 pKa = 4.75DD174 pKa = 3.34FGQTLGYY181 pKa = 10.08YY182 pKa = 9.04GVPEE186 pKa = 4.73GPYY189 pKa = 11.02LMLPFYY195 pKa = 10.87GPSTLRR201 pKa = 11.84DD202 pKa = 3.21APARR206 pKa = 11.84YY207 pKa = 9.15VDD209 pKa = 3.73SFVDD213 pKa = 3.42YY214 pKa = 10.13TSYY217 pKa = 11.21VDD219 pKa = 4.7HH220 pKa = 6.7VPTRR224 pKa = 11.84NSLMGVEE231 pKa = 4.21AVNVRR236 pKa = 11.84SQLIQAEE243 pKa = 4.16AFITGDD249 pKa = 3.02RR250 pKa = 11.84YY251 pKa = 9.04TFIRR255 pKa = 11.84DD256 pKa = 2.95AYY258 pKa = 8.84LQRR261 pKa = 11.84RR262 pKa = 11.84QYY264 pKa = 11.26LVLDD268 pKa = 3.83GQMPDD273 pKa = 4.27DD274 pKa = 4.28EE275 pKa = 5.06EE276 pKa = 5.16FDD278 pKa = 3.66EE279 pKa = 5.51FGGFGSAGEE288 pKa = 4.42SYY290 pKa = 10.86GGEE293 pKa = 4.26SYY295 pKa = 11.02GGEE298 pKa = 4.3SYY300 pKa = 11.02GGEE303 pKa = 4.3SYY305 pKa = 11.02GGEE308 pKa = 4.3SYY310 pKa = 11.02GGEE313 pKa = 4.3SYY315 pKa = 11.02GGEE318 pKa = 4.17SYY320 pKa = 11.25GGDD323 pKa = 3.41EE324 pKa = 5.42DD325 pKa = 5.59SDD327 pKa = 4.19PNRR330 pKa = 11.84DD331 pKa = 3.81NLSGSADD338 pKa = 3.81DD339 pKa = 6.01QIDD342 pKa = 3.87PPLNEE347 pKa = 3.72TDD349 pKa = 3.47GRR351 pKa = 11.84SDD353 pKa = 4.17NDD355 pKa = 3.74DD356 pKa = 4.45KK357 pKa = 11.65LPQDD361 pKa = 3.84SEE363 pKa = 4.47FF364 pKa = 3.99

Molecular weight: 39.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3M0AB83|A0A3M0AB83_9GAMM Glycine dehydrogenase (decarboxylating) OS=Umboniibacter marinipuniceus OX=569599 GN=gcvP PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84QVINRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.39GRR39 pKa = 11.84KK40 pKa = 8.88RR41 pKa = 11.84LTVV44 pKa = 3.11

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2413

0

2413

804001

29

1961

333.2

36.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.053 ± 0.054

0.969 ± 0.014

5.779 ± 0.045

6.437 ± 0.05

3.986 ± 0.031

7.251 ± 0.044

2.128 ± 0.023

5.822 ± 0.037

3.818 ± 0.039

10.335 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.369 ± 0.022

3.81 ± 0.027

4.023 ± 0.026

4.179 ± 0.031

5.383 ± 0.041

6.915 ± 0.043

5.205 ± 0.037

7.331 ± 0.037

1.337 ± 0.022

2.869 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski