Amino acid dipepetide frequency for Phaseolus vulgaris alphaendornavirus 2

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.896AlaAla: 5.896 ± 0.0
0.813AlaCys: 0.813 ± 0.0
3.049AlaAsp: 3.049 ± 0.0
4.269AlaGlu: 4.269 ± 0.0
1.016AlaPhe: 1.016 ± 0.0
2.643AlaGly: 2.643 ± 0.0
1.83AlaHis: 1.83 ± 0.0
3.456AlaIle: 3.456 ± 0.0
3.863AlaLys: 3.863 ± 0.0
4.879AlaLeu: 4.879 ± 0.0
2.643AlaMet: 2.643 ± 0.0
3.456AlaAsn: 3.456 ± 0.0
2.033AlaPro: 2.033 ± 0.0
2.236AlaGln: 2.236 ± 0.0
4.066AlaArg: 4.066 ± 0.0
4.269AlaSer: 4.269 ± 0.0
5.286AlaThr: 5.286 ± 0.0
3.659AlaVal: 3.659 ± 0.0
1.016AlaTrp: 1.016 ± 0.0
1.626AlaTyr: 1.626 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.016CysAla: 1.016 ± 0.0
2.033CysCys: 2.033 ± 0.0
1.22CysAsp: 1.22 ± 0.0
1.83CysGlu: 1.83 ± 0.0
0.407CysPhe: 0.407 ± 0.0
1.626CysGly: 1.626 ± 0.0
0.813CysHis: 0.813 ± 0.0
1.83CysIle: 1.83 ± 0.0
2.033CysLys: 2.033 ± 0.0
1.626CysLeu: 1.626 ± 0.0
1.016CysMet: 1.016 ± 0.0
1.016CysAsn: 1.016 ± 0.0
0.61CysPro: 0.61 ± 0.0
0.407CysGln: 0.407 ± 0.0
0.813CysArg: 0.813 ± 0.0
0.61CysSer: 0.61 ± 0.0
1.626CysThr: 1.626 ± 0.0
2.44CysVal: 2.44 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.813CysTyr: 0.813 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.049AspAla: 3.049 ± 0.0
1.423AspCys: 1.423 ± 0.0
4.066AspAsp: 4.066 ± 0.0
3.456AspGlu: 3.456 ± 0.0
1.22AspPhe: 1.22 ± 0.0
2.643AspGly: 2.643 ± 0.0
1.626AspHis: 1.626 ± 0.0
2.44AspIle: 2.44 ± 0.0
3.659AspLys: 3.659 ± 0.0
6.505AspLeu: 6.505 ± 0.0
1.83AspMet: 1.83 ± 0.0
2.033AspAsn: 2.033 ± 0.0
2.236AspPro: 2.236 ± 0.0
1.83AspGln: 1.83 ± 0.0
1.423AspArg: 1.423 ± 0.0
2.846AspSer: 2.846 ± 0.0
4.269AspThr: 4.269 ± 0.0
4.472AspVal: 4.472 ± 0.0
1.22AspTrp: 1.22 ± 0.0
2.44AspTyr: 2.44 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
3.049GluAla: 3.049 ± 0.0
2.643GluCys: 2.643 ± 0.0
2.033GluAsp: 2.033 ± 0.0
4.269GluGlu: 4.269 ± 0.0
2.44GluPhe: 2.44 ± 0.0
3.659GluGly: 3.659 ± 0.0
2.236GluHis: 2.236 ± 0.0
3.659GluIle: 3.659 ± 0.0
2.846GluLys: 2.846 ± 0.0
6.302GluLeu: 6.302 ± 0.0
2.44GluMet: 2.44 ± 0.0
2.033GluAsn: 2.033 ± 0.0
3.253GluPro: 3.253 ± 0.0
4.066GluGln: 4.066 ± 0.0
3.456GluArg: 3.456 ± 0.0
2.846GluSer: 2.846 ± 0.0
2.846GluThr: 2.846 ± 0.0
3.049GluVal: 3.049 ± 0.0
1.22GluTrp: 1.22 ± 0.0
1.626GluTyr: 1.626 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.83PheAla: 1.83 ± 0.0
1.016PheCys: 1.016 ± 0.0
1.016PheAsp: 1.016 ± 0.0
2.44PheGlu: 2.44 ± 0.0
0.203PhePhe: 0.203 ± 0.0
2.236PheGly: 2.236 ± 0.0
0.407PheHis: 0.407 ± 0.0
0.0PheIle: 0.0 ± 0.0
2.846PheLys: 2.846 ± 0.0
2.44PheLeu: 2.44 ± 0.0
0.813PheMet: 0.813 ± 0.0
2.033PheAsn: 2.033 ± 0.0
1.016PhePro: 1.016 ± 0.0
0.203PheGln: 0.203 ± 0.0
0.407PheArg: 0.407 ± 0.0
1.626PheSer: 1.626 ± 0.0
1.626PheThr: 1.626 ± 0.0
1.22PheVal: 1.22 ± 0.0
0.61PheTrp: 0.61 ± 0.0
0.203PheTyr: 0.203 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.643GlyAla: 2.643 ± 0.0
1.016GlyCys: 1.016 ± 0.0
3.253GlyAsp: 3.253 ± 0.0
3.456GlyGlu: 3.456 ± 0.0
1.423GlyPhe: 1.423 ± 0.0
4.269GlyGly: 4.269 ± 0.0
0.813GlyHis: 0.813 ± 0.0
2.846GlyIle: 2.846 ± 0.0
3.253GlyLys: 3.253 ± 0.0
5.489GlyLeu: 5.489 ± 0.0
3.049GlyMet: 3.049 ± 0.0
2.236GlyAsn: 2.236 ± 0.0
3.253GlyPro: 3.253 ± 0.0
2.44GlyGln: 2.44 ± 0.0
1.423GlyArg: 1.423 ± 0.0
4.269GlySer: 4.269 ± 0.0
3.456GlyThr: 3.456 ± 0.0
4.269GlyVal: 4.269 ± 0.0
0.203GlyTrp: 0.203 ± 0.0
1.626GlyTyr: 1.626 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.236HisAla: 2.236 ± 0.0
1.22HisCys: 1.22 ± 0.0
1.22HisAsp: 1.22 ± 0.0
1.626HisGlu: 1.626 ± 0.0
0.203HisPhe: 0.203 ± 0.0
2.44HisGly: 2.44 ± 0.0
2.033HisHis: 2.033 ± 0.0
2.236HisIle: 2.236 ± 0.0
1.423HisLys: 1.423 ± 0.0
2.033HisLeu: 2.033 ± 0.0
0.61HisMet: 0.61 ± 0.0
2.643HisAsn: 2.643 ± 0.0
1.423HisPro: 1.423 ± 0.0
0.61HisGln: 0.61 ± 0.0
1.626HisArg: 1.626 ± 0.0
1.22HisSer: 1.22 ± 0.0
2.44HisThr: 2.44 ± 0.0
1.423HisVal: 1.423 ± 0.0
0.61HisTrp: 0.61 ± 0.0
1.016HisTyr: 1.016 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.049IleAla: 3.049 ± 0.0
1.016IleCys: 1.016 ± 0.0
4.879IleAsp: 4.879 ± 0.0
4.269IleGlu: 4.269 ± 0.0
0.407IlePhe: 0.407 ± 0.0
2.643IleGly: 2.643 ± 0.0
0.407IleHis: 0.407 ± 0.0
3.456IleIle: 3.456 ± 0.0
3.863IleLys: 3.863 ± 0.0
2.44IleLeu: 2.44 ± 0.0
2.236IleMet: 2.236 ± 0.0
3.456IleAsn: 3.456 ± 0.0
1.016IlePro: 1.016 ± 0.0
1.83IleGln: 1.83 ± 0.0
2.236IleArg: 2.236 ± 0.0
3.863IleSer: 3.863 ± 0.0
3.863IleThr: 3.863 ± 0.0
3.456IleVal: 3.456 ± 0.0
0.407IleTrp: 0.407 ± 0.0
1.626IleTyr: 1.626 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.253LysAla: 3.253 ± 0.0
1.016LysCys: 1.016 ± 0.0
2.033LysAsp: 2.033 ± 0.0
4.066LysGlu: 4.066 ± 0.0
2.033LysPhe: 2.033 ± 0.0
1.83LysGly: 1.83 ± 0.0
1.626LysHis: 1.626 ± 0.0
3.253LysIle: 3.253 ± 0.0
2.846LysLys: 2.846 ± 0.0
12.807LysLeu: 12.807 ± 0.0
1.626LysMet: 1.626 ± 0.0
3.253LysAsn: 3.253 ± 0.0
2.236LysPro: 2.236 ± 0.0
3.456LysGln: 3.456 ± 0.0
2.236LysArg: 2.236 ± 0.0
3.863LysSer: 3.863 ± 0.0
4.066LysThr: 4.066 ± 0.0
4.472LysVal: 4.472 ± 0.0
2.236LysTrp: 2.236 ± 0.0
3.049LysTyr: 3.049 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
5.896LeuAla: 5.896 ± 0.0
1.626LeuCys: 1.626 ± 0.0
5.896LeuAsp: 5.896 ± 0.0
4.472LeuGlu: 4.472 ± 0.0
2.643LeuPhe: 2.643 ± 0.0
6.912LeuGly: 6.912 ± 0.0
3.456LeuHis: 3.456 ± 0.0
4.269LeuIle: 4.269 ± 0.0
6.099LeuLys: 6.099 ± 0.0
7.928LeuLeu: 7.928 ± 0.0
2.846LeuMet: 2.846 ± 0.0
7.115LeuAsn: 7.115 ± 0.0
3.049LeuPro: 3.049 ± 0.0
4.472LeuGln: 4.472 ± 0.0
5.692LeuArg: 5.692 ± 0.0
3.456LeuSer: 3.456 ± 0.0
9.148LeuThr: 9.148 ± 0.0
8.132LeuVal: 8.132 ± 0.0
1.423LeuTrp: 1.423 ± 0.0
2.236LeuTyr: 2.236 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.846MetAla: 2.846 ± 0.0
0.813MetCys: 0.813 ± 0.0
1.626MetAsp: 1.626 ± 0.0
2.846MetGlu: 2.846 ± 0.0
1.626MetPhe: 1.626 ± 0.0
1.423MetGly: 1.423 ± 0.0
1.016MetHis: 1.016 ± 0.0
1.22MetIle: 1.22 ± 0.0
1.016MetLys: 1.016 ± 0.0
3.049MetLeu: 3.049 ± 0.0
1.83MetMet: 1.83 ± 0.0
1.22MetAsn: 1.22 ± 0.0
1.016MetPro: 1.016 ± 0.0
1.626MetGln: 1.626 ± 0.0
2.236MetArg: 2.236 ± 0.0
4.269MetSer: 4.269 ± 0.0
3.253MetThr: 3.253 ± 0.0
2.846MetVal: 2.846 ± 0.0
1.016MetTrp: 1.016 ± 0.0
1.423MetTyr: 1.423 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.659AsnAla: 3.659 ± 0.0
1.423AsnCys: 1.423 ± 0.0
2.643AsnAsp: 2.643 ± 0.0
3.456AsnGlu: 3.456 ± 0.0
1.016AsnPhe: 1.016 ± 0.0
2.44AsnGly: 2.44 ± 0.0
2.44AsnHis: 2.44 ± 0.0
2.44AsnIle: 2.44 ± 0.0
4.066AsnLys: 4.066 ± 0.0
5.286AsnLeu: 5.286 ± 0.0
2.44AsnMet: 2.44 ± 0.0
2.236AsnAsn: 2.236 ± 0.0
2.236AsnPro: 2.236 ± 0.0
3.456AsnGln: 3.456 ± 0.0
3.049AsnArg: 3.049 ± 0.0
3.863AsnSer: 3.863 ± 0.0
2.44AsnThr: 2.44 ± 0.0
3.049AsnVal: 3.049 ± 0.0
0.203AsnTrp: 0.203 ± 0.0
1.626AsnTyr: 1.626 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.236ProAla: 2.236 ± 0.0
1.016ProCys: 1.016 ± 0.0
3.049ProAsp: 3.049 ± 0.0
2.236ProGlu: 2.236 ± 0.0
1.423ProPhe: 1.423 ± 0.0
1.22ProGly: 1.22 ± 0.0
1.22ProHis: 1.22 ± 0.0
2.236ProIle: 2.236 ± 0.0
3.863ProLys: 3.863 ± 0.0
4.472ProLeu: 4.472 ± 0.0
0.813ProMet: 0.813 ± 0.0
3.049ProAsn: 3.049 ± 0.0
1.83ProPro: 1.83 ± 0.0
1.626ProGln: 1.626 ± 0.0
0.813ProArg: 0.813 ± 0.0
2.236ProSer: 2.236 ± 0.0
2.643ProThr: 2.643 ± 0.0
1.83ProVal: 1.83 ± 0.0
1.423ProTrp: 1.423 ± 0.0
0.813ProTyr: 0.813 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.846GlnAla: 2.846 ± 0.0
0.61GlnCys: 0.61 ± 0.0
2.236GlnAsp: 2.236 ± 0.0
1.626GlnGlu: 1.626 ± 0.0
1.016GlnPhe: 1.016 ± 0.0
2.44GlnGly: 2.44 ± 0.0
1.423GlnHis: 1.423 ± 0.0
2.643GlnIle: 2.643 ± 0.0
1.22GlnLys: 1.22 ± 0.0
7.319GlnLeu: 7.319 ± 0.0
1.423GlnMet: 1.423 ± 0.0
1.22GlnAsn: 1.22 ± 0.0
2.033GlnPro: 2.033 ± 0.0
2.643GlnGln: 2.643 ± 0.0
1.22GlnArg: 1.22 ± 0.0
3.049GlnSer: 3.049 ± 0.0
4.066GlnThr: 4.066 ± 0.0
3.659GlnVal: 3.659 ± 0.0
0.813GlnTrp: 0.813 ± 0.0
1.22GlnTyr: 1.22 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.253ArgAla: 3.253 ± 0.0
1.016ArgCys: 1.016 ± 0.0
2.44ArgAsp: 2.44 ± 0.0
1.83ArgGlu: 1.83 ± 0.0
1.626ArgPhe: 1.626 ± 0.0
2.033ArgGly: 2.033 ± 0.0
1.626ArgHis: 1.626 ± 0.0
1.83ArgIle: 1.83 ± 0.0
2.44ArgLys: 2.44 ± 0.0
4.472ArgLeu: 4.472 ± 0.0
1.626ArgMet: 1.626 ± 0.0
2.033ArgAsn: 2.033 ± 0.0
2.44ArgPro: 2.44 ± 0.0
2.236ArgGln: 2.236 ± 0.0
2.846ArgArg: 2.846 ± 0.0
3.456ArgSer: 3.456 ± 0.0
4.066ArgThr: 4.066 ± 0.0
3.456ArgVal: 3.456 ± 0.0
0.61ArgTrp: 0.61 ± 0.0
1.423ArgTyr: 1.423 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.253SerAla: 3.253 ± 0.0
1.016SerCys: 1.016 ± 0.0
1.83SerAsp: 1.83 ± 0.0
3.659SerGlu: 3.659 ± 0.0
1.423SerPhe: 1.423 ± 0.0
3.049SerGly: 3.049 ± 0.0
2.44SerHis: 2.44 ± 0.0
3.049SerIle: 3.049 ± 0.0
6.505SerLys: 6.505 ± 0.0
4.066SerLeu: 4.066 ± 0.0
2.44SerMet: 2.44 ± 0.0
4.066SerAsn: 4.066 ± 0.0
1.22SerPro: 1.22 ± 0.0
2.846SerGln: 2.846 ± 0.0
3.253SerArg: 3.253 ± 0.0
3.253SerSer: 3.253 ± 0.0
4.879SerThr: 4.879 ± 0.0
3.659SerVal: 3.659 ± 0.0
1.423SerTrp: 1.423 ± 0.0
1.626SerTyr: 1.626 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
5.286ThrAla: 5.286 ± 0.0
1.016ThrCys: 1.016 ± 0.0
4.269ThrAsp: 4.269 ± 0.0
4.066ThrGlu: 4.066 ± 0.0
0.407ThrPhe: 0.407 ± 0.0
3.863ThrGly: 3.863 ± 0.0
2.033ThrHis: 2.033 ± 0.0
5.896ThrIle: 5.896 ± 0.0
5.082ThrLys: 5.082 ± 0.0
6.099ThrLeu: 6.099 ± 0.0
3.253ThrMet: 3.253 ± 0.0
4.879ThrAsn: 4.879 ± 0.0
3.253ThrPro: 3.253 ± 0.0
3.659ThrGln: 3.659 ± 0.0
3.253ThrArg: 3.253 ± 0.0
4.472ThrSer: 4.472 ± 0.0
8.742ThrThr: 8.742 ± 0.0
5.286ThrVal: 5.286 ± 0.0
0.813ThrTrp: 0.813 ± 0.0
2.033ThrTyr: 2.033 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.253ValAla: 3.253 ± 0.0
1.626ValCys: 1.626 ± 0.0
4.472ValAsp: 4.472 ± 0.0
4.676ValGlu: 4.676 ± 0.0
2.236ValPhe: 2.236 ± 0.0
3.049ValGly: 3.049 ± 0.0
1.626ValHis: 1.626 ± 0.0
3.049ValIle: 3.049 ± 0.0
4.066ValLys: 4.066 ± 0.0
5.896ValLeu: 5.896 ± 0.0
3.049ValMet: 3.049 ± 0.0
3.049ValAsn: 3.049 ± 0.0
3.253ValPro: 3.253 ± 0.0
3.253ValGln: 3.253 ± 0.0
3.659ValArg: 3.659 ± 0.0
3.863ValSer: 3.863 ± 0.0
5.489ValThr: 5.489 ± 0.0
5.489ValVal: 5.489 ± 0.0
1.423ValTrp: 1.423 ± 0.0
2.643ValTyr: 2.643 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
2.033TrpAla: 2.033 ± 0.0
0.203TrpCys: 0.203 ± 0.0
0.61TrpAsp: 0.61 ± 0.0
0.407TrpGlu: 0.407 ± 0.0
0.61TrpPhe: 0.61 ± 0.0
1.22TrpGly: 1.22 ± 0.0
0.61TrpHis: 0.61 ± 0.0
0.407TrpIle: 0.407 ± 0.0
1.423TrpLys: 1.423 ± 0.0
1.423TrpLeu: 1.423 ± 0.0
1.22TrpMet: 1.22 ± 0.0
0.813TrpAsn: 0.813 ± 0.0
1.016TrpPro: 1.016 ± 0.0
0.61TrpGln: 0.61 ± 0.0
1.22TrpArg: 1.22 ± 0.0
0.407TrpSer: 0.407 ± 0.0
0.813TrpThr: 0.813 ± 0.0
0.813TrpVal: 0.813 ± 0.0
0.61TrpTrp: 0.61 ± 0.0
1.016TrpTyr: 1.016 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.423TyrAla: 1.423 ± 0.0
1.22TyrCys: 1.22 ± 0.0
2.846TyrAsp: 2.846 ± 0.0
1.016TyrGlu: 1.016 ± 0.0
0.813TyrPhe: 0.813 ± 0.0
3.049TyrGly: 3.049 ± 0.0
0.61TyrHis: 0.61 ± 0.0
0.203TyrIle: 0.203 ± 0.0
2.846TyrLys: 2.846 ± 0.0
2.236TyrLeu: 2.236 ± 0.0
0.813TyrMet: 0.813 ± 0.0
1.626TyrAsn: 1.626 ± 0.0
1.626TyrPro: 1.626 ± 0.0
1.423TyrGln: 1.423 ± 0.0
1.83TyrArg: 1.83 ± 0.0
1.22TyrSer: 1.22 ± 0.0
2.643TyrThr: 2.643 ± 0.0
2.44TyrVal: 2.44 ± 0.0
0.203TyrTrp: 0.203 ± 0.0
1.423TyrTyr: 1.423 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (4920 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski