Acidianus rod-shaped virus 2

Taxonomy: Viruses; Adnaviria; Zilligvirae; Taleaviricota; Tokiviricetes; Ligamenvirales; Rudiviridae; Hoswirudivirus; Hoswirudivirus ARV2

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 43 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0N9PB33|A0A0N9PB33_9VIRU Uncharacterized protein OS=Acidianus rod-shaped virus 2 OX=1732175 PE=4 SV=1
MM1 pKa = 7.48NCLTVLKK8 pKa = 10.53QKK10 pKa = 10.65GYY12 pKa = 10.6NLDD15 pKa = 4.13GYY17 pKa = 11.48SSDD20 pKa = 3.88TILALEE26 pKa = 4.18EE27 pKa = 4.81AEE29 pKa = 5.12LDD31 pKa = 3.87PEE33 pKa = 3.98EE34 pKa = 5.83CEE36 pKa = 4.81ALFHH40 pKa = 6.03YY41 pKa = 10.78LEE43 pKa = 4.26IVYY46 pKa = 10.25GG47 pKa = 3.84

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N9PCU3|A0A0N9PCU3_9VIRU Uncharacterized protein OS=Acidianus rod-shaped virus 2 OX=1732175 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.1GHH5 pKa = 5.63TPRR8 pKa = 11.84SFAQRR13 pKa = 11.84YY14 pKa = 7.09SKK16 pKa = 10.38WSAKK20 pKa = 8.15FTAFSNPTVASTILTNVAPSAQGNFQTNVTKK51 pKa = 9.53FTSVNEE57 pKa = 3.99QVSAVLTQYY66 pKa = 11.34GVTGPMRR73 pKa = 11.84AIYY76 pKa = 9.6QGYY79 pKa = 7.76GLKK82 pKa = 10.09VARR85 pKa = 11.84ALNRR89 pKa = 11.84IGAGPALTNMIAGLKK104 pKa = 9.61AYY106 pKa = 9.63YY107 pKa = 10.37VSAFGANPTILDD119 pKa = 3.62AVTNIITGSPNGYY132 pKa = 9.96VSS134 pKa = 3.24

Molecular weight: 14.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

43

0

43

8767

47

1115

203.9

23.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.692 ± 0.371

0.73 ± 0.177

5.11 ± 0.391

6.593 ± 0.526

5.213 ± 0.263

4.688 ± 0.289

1.152 ± 0.15

9.239 ± 0.421

7.734 ± 0.554

9.581 ± 0.528

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.099 ± 0.173

6.194 ± 0.542

3.901 ± 0.223

4.426 ± 0.38

3.114 ± 0.253

5.794 ± 0.393

5.076 ± 0.255

6.627 ± 0.282

0.913 ± 0.106

6.125 ± 0.319
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski